JamesD.BrooksMD

Urology • Stanford, CA

Professor, Urology, Stanford University Medical Center

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Office
300 Pasteur Dr
Stanford, CA 94305
Phone+1 650-725-5746
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Education & Training

Johns Hopkins UniversityResidency, Urology, 1990 - 1994
Johns Hopkins UniversityResidency, Surgery, 1988 - 1990
Stanford University School of MedicineClass of 1988

Certifications & Licensure

CA State Medical License 1997 - 2025
MD State Medical License 1991 - 2000
American Board of Urology Urology

Awards, Honors, & Recognition

Regional Top Doctor Castle Connolly, 2014
CMS Meaningful Use Stage 1 Certification EpicCare Ambulatory EMR, Epic Systems Corporation, 2011-2013

Clinical Trials

Microarray Analysis of Gene Expression in Prostate Tissues Start of enrollment: 1999 Apr 06
Active, not recruiting
Quality of Life Following Radical Prostatectomy Start of enrollment: 2002 Sep 01
Completed
Prostate Active Surveillance Study Start of enrollment: 2008 Jul 01
Recruiting
Photoacoustic Imaging (PAI) of the Prostate: A Clinical Feasibility Study Start of enrollment: 2014 Feb 01
Completed
Prostate Artery Embolization With Embosphere Microspheres Compared to TURP for Benign Prostatic Hyperplasia Start of enrollment: 2013 Jul 01
Terminated
Not Applicable
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Publications & Presentations

PubMed

Mortality Risks Associated with Depression in Men with Prostate Cancer.
Pär Stattin, Jan Sundquist, Weiva Sieh, Kristina Sundquist, Casey Crump, James D Brooks> ;European Urology Oncology. 2024 Apr 3
RAPHIA: A deep learning pipeline for the registration of MRI and whole-mount histopathology images of the prostate.
Wei Shao, Sulaiman Vesal, Simon J C Soerensen, Indrani Bhattacharya, Negar Golestani, Rikiya Yamashita, Richard E Fan, Mirabela Rusu, Christian A Kunder, Pejman Ghanou...> ;Computers in Biology and Medicine. 2024 May 1
Critical evaluation of artificial intelligence as a digital twin of pathologists for prostate cancer pathology.
Okyaz Eminaga, Mahmoud Abbas, Christian Kunder, Yuri Tolkach, Ryan Han, James D Brooks, Rosalie Nolley, Axel Semjonow, Martin Boegemann, Robert West, Jin Long, Richard...> ;Scientific Reports. 2024 Mar 4
Ga-RM2 PET-MRI versus MRI alone for evaluation of patients with biochemical recurrence of prostate cancer: a single-centre, single-arm, phase 2/3 imaging trial.
Heying Duan, Farshad Moradi, Guido A Davidzon, Tie Liang, Hong Song, Andreas M Loening, Shreyas Vasanawala, Sandy Srinivas, James D Brooks, Steven Hancock, Andrei Iagaru> ;The Lancet. Oncology. 2024 Apr 1
Response to lao, guan, wang, et al.
Stattin, P., Sundquist, J., Edwards, A., Sundquist, K., Sieh, W., Crump, C., Brooks, J.> ;Journal of the National Cancer Institute. 2024 Feb 10
UCHL1 is a potential molecular indicator and therapeutic target for neuroendocrine carcinomas.
Shiqin Liu, Timothy Chai, Fernando Garcia-Marques, Qingqing Yin, En-Chi Hsu, Michelle Shen, Angus Martin Shaw Toland, Abel Bermudez, Alifiani B Hartono, Christopher F ...> ;Cell Reports. Medicine. 2024 Feb 20
High expression of Trop2 is associated with aggressive localized prostate cancer and is a candidate urinary biomarker.
Liu, S., Hawley, S., Kunder, C., Hsu, E., Shen, M., Westphalen, L., Auman, H., Newcomb, L., Lin, D., Nelson, P., Feng, Z., Tretiakova, M., True, L., Vakar-Lopez, F., C...> ;Scientific Reports. 2024 Jan 4
Risks of Depression, Anxiety, and Suicide in Partners of Men with Prostate Cancer: A National Cohort Study.
Stattin, P., Brooks, J., Sundquist, J., Edwards, A., Sundquist, K., Sieh, W., Crump, C.> ;Journal of the National Cancer Institute. 2023 Dec 7
Patient and physician perspectives on treatments for low-risk prostate cancer: a qualitative study.
Guan, A., Santiago-Rodríguez, E., Chung, B., Shim, J., Allen, L., Kuo, M., Lau, K., Loya, Z., Brooks, J., Cheng, I., DeRouen, M., Frosch, D., Golden, T., Leppert, J., ...> ;BMC Cancer. 2023 Dec 5
Spatial transcriptomics identifies candidate stromal drivers of benign prostatic hyperplasia.
Anna S Pollack, Christian A Kunder, Noah Brazer, Zhewei Shen, Sushama Varma, Gerald R Cunha, Laurence S Baskin, James D Brooks, Jonathan R Pollack, West, R.> ;JCI Insight. 2024 Jan 23
Identification of age- and immune-related gene signatures for clinical outcome prediction in lung adenocarcinoma.
Andrew Zhou, Dalin Zhang, Xiaoman Kang, James D Brooks> ;Cancer Medicine. 2023 Aug 1
1 citations
Risks of alcohol and drug use disorders in prostate cancer survivors: a national cohort study.
Casey Crump, Pär Stattin, James D Brooks, Jan Sundquist, Alexis C Edwards, Weiva Sieh, Kristina Sundquist> ;JNCI Cancer Spectrum. 2023 Jul 3
Artificial Intelligence-Based PTEN Loss Assessment as an Early Predictor of Prostate Cancer Metastasis After Surgery: A Multicenter Retrospective Study.
Palak Patel, Stephanie Harmon, Rachael Iseman, Olga Ludkowski, Heidi Auman, Sarah Hawley, Lisa F Newcomb, Daniel W Lin, Peter S Nelson, Ziding Feng, Hilary D Boyer, Ma...> ;Modern Pathology. 2023 Oct 1
Distinguishing Renal Cell Carcinoma From Normal Kidney Tissue Using Mass Spectrometry Imaging Combined With Machine Learning.
Vishnu Shankar, Kanchustambham Vijayalakshmi, Rosalie Nolley, Geoffrey A Sonn, Chia-Sui Kao, Hongjuan Zhao, Ru Wen, Livia S Eberlin, Robert Tibshirani, Richard N Zare,...> ;JCO Precision Oncology. 2023 Jun 1
8 citations
Long-term Risks of Depression and Suicide Among Men with Prostate Cancer: A National Cohort Study.
Casey Crump, Pär Stattin, James D Brooks, Jan Sundquist, Anna Bill-Axelson, Alexis C Edwards, Kristina Sundquist, Weiva Sieh> ;European Urology. 2023 Sep 1
5 citations
NUSAP1 Binds ILF2 to Modulate R-Loop Accumulation and DNA Damage in Prostate Cancer.
Chun-Lung Chiu, Caiyun G Li, Erik Verschueren, Ru M Wen, Dalin Zhang, Catherine A Gordon, Hongjuan Zhao, Amato J Giaccia, James D Brooks> ;International Journal of Molecular Sciences. 2023 Mar 26
4 citations
PlexusNet: A neural network architectural concept for medical image classification.
Okyaz Eminaga, Mahmoud Abbas, Jeanne Shen, Mark Laurie, James D Brooks, Joseph C Liao, Daniel L Rubin> ;Computers in Biology and Medicine. 2023 Mar 1
Prosteria - National Trends and Outcomes of More Frequent Than Guideline Recommended Prostate Specific Antigen Screening.
Hriday P Bhambhvani, David R W Baird, Shufeng Li, Michael L Eisenberg, James D Brooks, Peterson, D.> ;Urology. 2023 Apr 1
2 citations
Fusion Gene Detection in Prostate Cancer Samples Enhances the Prediction of Prostate Cancer Clinical Outcomes from Radical Prostatectomy through Machine Learning in a ...
Yan-Ping Yu, Silvia Liu, Bao-Guo Ren, Joel Nelson, David Jarrard, James D Brooks, George Michalopoulos, George Tseng, Jian-Hua Luo, Luo, J.> ;The American Journal of Pathology. 2023 Apr 1
Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images.
Grigorios M Karageorgos, Sanghee Cho, Elizabeth McDonough, Chrystal Chadwick, Soumya Ghose, Jonathan Owens, Kyeong Joo Jung, Raghu Machiraju, Robert West, James D Broo...> ;Frontiers in Bioinformatics. 2023 Jan 1
2 citations
Measuring the multifaceted roles of mucin-domain glycoproteins in cancer.
Nicholas M Riley, Ru M Wen, Carolyn R Bertozzi, James D Brooks, Sharon J Pitteri> ;Advances in Cancer Research. 2023 Jan 1
2 citations
Factors that influence treatment decisions: A qualitative study of racially and ethnically diverse patients with low- and very-low risk prostate cancer.
Alice Guan, Janet K Shim, Laura Allen, Mei-Chin Kuo, Kathie Lau, Zinnia Loya, James D Brooks, Peter R Carroll, Iona Cheng, Benjamin I Chung, Mindy C DeRouen, Dominic L...> ;Cancer Medicine. 2023 Mar 1
2 citations
Multiparametric Magnetic Resonance Imaging and Metabolic Characterization of Patient-Derived Xenograft Models of Clear Cell Renal Cell Carcinoma.
Joao Piraquive Agudelo, Deepti Upadhyay, Dalin Zhang, Hongjuan Zhao, Rosalie Nolley, Jinny Sun, Shubhangi Agarwal, Robert A Bok, Daniel B Vigneron, James D Brooks, Joh...> ;Metabolites. 2022 Nov 15
3 citations
Dietary Patterns and Risk of Gleason Grade Progression among Men on Active Surveillance for Prostate Cancer: Results from the Canary Prostate Active Surveillance Study.
Jeannette M Schenk, Menghan Liu, Marian L Neuhouser, Lisa F Newcomb, Yingye Zheng, Kehao Zhu, James D Brooks, Peter R Carroll, Atreya Dash, William J Ellis, Christophe...> ;Nutrition and Cancer. 2023 Jan 1
6 citations
The controversial role and therapeutic development of the m6A demethylase FTO in renal cell carcinoma.
Dalin Zhang, Sarah Wornow, Donna M Peehl, Erinn B Rankin, James D Brooks> ;Translational Oncology. 2022 Nov 1
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Press Mentions

These New, $300,000,000 Cancer Treatment Centers Are Saving Lives -- but Questions Linger About Cost and Efficacy | SurvivorNetJuly 26th, 2019
Two Genes Implicated in Development of Prostate EnlargementJune 14th, 2019