JeanneShenMD

PubMed

• Prediction of immunochemotherapy response for diffuse large B-cell lymphoma using artificial intelligence digital pathology.
  Jeong Hoon Lee, Ga-Young Song, Jonghyun Lee, Sae-Ryung Kang, Kyoung Min Moon, Yoo-Duk Choi, Myung-Giun Noh, Deok-Hwan Yang, Jeanne Shen> ;The Journal of Pathology. Clinical Research. 2024 May 1
• Generation of synthetic whole-slide image tiles of tumours from RNA-sequencing data via cascaded diffusion models.
  Francisco Carrillo-Perez, Marija Pizurica, Yuanning Zheng, Tarak Nath Nandi, Ravi Madduri, Olivier Gevaert, Jeanne Shen> ;Nature Biomedical Engineering. 2024 Mar 21
• Inflamed immune phenotype predicts favorable clinical outcomes of immune checkpoint inhibitor therapy across multiple cancer types.
  Shen, J., Choi, Y., Lee, T., Kim, H., Chae, Y., Dulken, B., Bogdan, S., Huang, M., Fisher, G., Park, S., Lee, S., Hwang, J., Chung, J., Kim, L., Song, H., Pereira, S.,...> ;Journal for Immunotherapy of Cancer. 2024 Feb 14
• A spatially mapped gene expression signature for intestinal stem-like cells identifies high-risk precursors of gastric cancer.
  Robert J Huang, Ignacio A Wichmann, Andrew Su, Anuja Sathe, Miranda V Shum, Susan M Grimes, Rithika Meka, Alison Almeda, Xiangqi Bai, Jeanne Shen, Quan Nguyen, Manuel ...> ;Biorxiv. 2023 Sep 22
• Synthetic whole-slide image tile generation with gene expression profile-infused deep generative models.
  Francisco Carrillo-Perez, Marija Pizurica, Michael G Ozawa, Hannes Vogel, Robert B West, Christina S Kong, Luis Javier Herrera, Jeanne Shen, Olivier Gevaert> ;Cell Reports Methods. 2023 Aug 28
• 3 citations
  Predicting lymph node metastasis from primary tumor histology and clinicopathologic factors in colorectal cancer using deep learning.
  Justin D Krogue, Shekoofeh Azizi, Fraser Tan, Isabelle Flament-Auvigne, Trissia Brown, Markus Plass, Robert Reihs, Heimo Müller, Kurt Zatloukal, Pema Richeson, Greg S ...> ;Communications Medicine. 2023 Apr 24
• 1 citations
  Small bowel adenocarcinoma in neoterminal ileum in setting of stricturing Crohn's disease: A case report and review of literature.
  Shruthi Karthikeyan, Jeanne Shen, Kian Keyashian, John Gubatan> ;World Journal of Clinical Cases. 2023 Mar 26
• 1 citations
  Rapid Deployment of Whole Slide Imaging for Primary Diagnosis in Surgical Pathology at Stanford Medicine: Responding to Challenges of the COVID-19 Pandemic.
  Rojansky, R., Jhun, I., Dussaq, A., Chirieleison, S., Nirschl, J., Born, D., Fralick, J., Hetherington, W., Kerr, A., Lavezo, J., Lawrence, D., Lummus, S., Macasaet, R...> ;Archives of Pathology & Laboratory Medicine. 2023 Mar 1
• 19 citations
  Computational pathology in 2030: a Delphi study forecasting the role of AI in pathology within the next decade.
  Berbís, M., McClintock, D., Bychkov, A., Van der Laak, J., Pantanowitz, L., Lennerz, J., Cheng, J., Delahunt, B., Egevad, L., Eloy, C., Farris, A., Fraggetta, F., Garc...> ;Ebiomedicine. 2023 Feb 1
• 4 citations
  PlexusNet: A neural network architectural concept for medical image classification.
  Okyaz Eminaga, Mahmoud Abbas, Jeanne Shen, Mark Laurie, James D Brooks, Joseph C Liao, Daniel L Rubin> ;Computers in Biology and Medicine. 2023 Mar 1
• A spatial map of human macrophage niches reveals context-dependent macrophage functions in colon and breast cancer.
  Magdalena Matusiak, John W Hickey, Bogdan Luca, Guolan Lu, Lukasz Kidziński, Shirley Zhu, Deana Rae Crystal Colburg, Darci J Phillips, Sky W Brubaker, Gregory W Charvi...> ;Research Square. 2023 Jan 10
• 9 citations
  Development and Validation of a Machine Learning Model for Detection and Classification of Tertiary Lymphoid Structures in Gastrointestinal Cancers.
  Zhe Li, Yuming Jiang, Bailiang Li, Zhen Han, Jeanne Shen, Yong Xia, Ruijiang Li> ;JAMA Network Open. 2023 Jan 3
• 2 citations
  Subcutaneous Sweet Syndrome Successfully Treated With Ustekinumab in a Patient With Ulcerative Colitis.
  Kelly A Hu, Jeanne Shen, Kerri Rieger, Mike T Wei, John Gubatan> ;ACG Case Reports Journal. 2022 Nov 1
• 12 citations
  Nestin as a diagnostic and prognostic marker for combined hepatocellular-cholangiocarcinoma.
  Julien Calderaro, Luca Di Tommaso, Pascale Maillé, Aurélie Beaufrère, Cong Trung Nguyen, Lara Heij, Viviane Gnemmi, Rondell P Graham, Frédéric Charlotte, Suzanne Chart...> ;Journal of Hepatology. 2022 Dec 1
• 70 citations
  Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer.
  Esplin, E. D., Winston R Becker, Stephanie A Nevins, Derek C Chen, Roxanne Chiu, Aaron M Horning, Tuhin K Guha, Rozelle Laquindanum, Meredith Mills, Hassan Chaib, Uri ...> ;Nature Genetics. 2022 Jul 1
• 5 citations
  AI-enabledimmunohistochemical characterization for Alzheimer's disease.
  Bryan He, Syed Bukhari, Edward Fox, Abubakar Abid, Jeanne Shen, Claudia Kawas, Maria Corrada, Thomas Montine, James Zou> ;Cell Reports Methods. 2022 Apr 25
• 11 citations
  Learning Domain-Agnostic Visual Representation for Computational Pathology Using Medically-Irrelevant Style Transfer Augmentation.
  Rikiya Yamashita, Jin Long, Snikitha Banda, Jeanne Shen, Daniel L Rubin> ;IEEE Transactions on Medical Imaging. 2021 Dec 1
• 487 citations
  Pancreatic adenocarcinoma, Version 2.2021
  Margaret A. Tempero, Mokenge P. Malafa, Mahmoud M. Al-Hawary, Stephen W. Behrman, Al B. Benson, Dana Backlund Cardin, E. Gabriela Chiorean, Vincent Chung, Brian G. Czi...> ;Journal of the National Comprehensive Cancer Network. 2021 Apr 1
• 8 citations
  Development and Use of Natural Language Processing for Identification of Distant Cancer Recurrence and Sites of Distant Recurrence Using Unstructured Electronic Health...
  Yasmin Karimi, Douglas W. Blayney, Allison W. Kurian, Jeanne Shen, Rikiya Yamashita, Daniel L. Rubin, Imon Banerjee> ;JCO Clinical Cancer Informatics. 2021 Apr 30
• 21 citations
  Deep learning predicts postsurgical recurrence of hepatocellular carcinoma from digital histopathologic images.
  Rikiya Yamashita, Jin Long, Atif Saleem, Daniel L. Rubin, Jeanne Shen> ;Scientific Reports. 2021 Jan 21
• 8 citations
  Pepsinogens and Gastrin Demonstrate Low Discrimination for Gastric Precancerous Lesions in a Multi-Ethnic United States Cohort
  Robert J. Huang, Sungho Park, Jeanne Shen, Teri A. Longacre, Hanlee P. Ji, Joo Ha Hwang> ;Clinical Gastroenterology and Hepatology. 2021 Jan 10
• 136 citations
  Deep learning model for the prediction of microsatellite instability in colorectal cancer: a diagnostic study.
  Rikiya Yamashita, Jin Long, Teri A. Longacre, Lan Peng, Gerald J. Berry, Brock A. Martin, John P. Higgins, Daniel L. Rubin, Jeanne Shen> ;The Lancet. Oncology. 2021 Jan 1
• 13 citations
  Enteric Glia Play a Critical Role in Promoting the Development of Colorectal Cancer.
  Robert Yuan, Nupur Bhattacharya, Justin A. Kenkel, Jeanne Shen, Michael A. DiMaio, Sreya Bagchi, Tyler R. Prestwood, Aida Habtezion, Edgar G. Engleman> ;Frontiers in Oncology. 2020 Nov 13
• 15 citations
  Hispanic/Latino Patients with Gastric Adenocarcinoma Have Distinct Molecular Profiles Including a High Rate of Germline CDH1 Variants
  Sam C. Wang, Yunku Yeu, Suntrea T.G. Hammer, Shu Xiao, Min Zhu, Changjin Hong, Jean R. Clemenceau, Lynn Y. Yoon, Ibrahim Nassour, Jeanne Shen, Deepak Agarwal, Scott I....> ;Cancer Research. 2020 Jun 1
• In the Thick of It: The Many Faces of Collagenous Gastritis.
  Sundeep Singh, Emily Jing, Jeanne Shen> ;Digestive Diseases and Sciences. 2020 Jan 9
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