LouisJ.VaickusMD

PubMed

• Intraoperative margin assessment for basal cell carcinoma with deep learning and histologic tumor mapping to surgical site.
  Joshua J Levy, Matthew J Davis, Rachael S Chacko, Michael J Davis, Lucy J Fu, Tarushii Goel, Akash Pamal, Irfan Nafi, Abhinav Angirekula, Anish Suvarna, Ram Vempati, B...> ;NPJ Precision Oncology. 2024 Jan 3
• A deep learning algorithm to detect cutaneous squamous cell carcinoma on frozen sections in Mohs micrographic surgery: A retrospective assessment.
  Matthew J Davis, Gokul Srinivasan, Rachael Chacko, Sophie Chen, Anish Suvarna, Louis J Vaickus, Veronica C Torres, Sassan Hodge, Eunice Y Chen, Sarah Preum, Kimberley ...> ;Experimental Dermatology. 2024 Jan 1
• 3 citations
  Assessment of emerging pretraining strategies in interpretable multimodal deep learning for cancer prognostication.
  Zarif L Azher, Anish Suvarna, Ji-Qing Chen, Ze Zhang, Brock C Christensen, Lucas A Salas, Louis J Vaickus, Joshua J Levy> ;Biodata Mining. 2023 Jul 22
• 1 citations
  Large-scale validation study of an improved semiautonomous urine cytology assessment tool: AutoParis-X.
  Joshua J Levy, Natt Chan, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann, Ryan E Glass, Caroline P Dodge, Arief A Suriawinata, Brock C Christensen, Xiaoying Liu, L...> ;Cancer Cytopathology. 2023 Oct 1
• Examining longitudinal markers of bladder cancer recurrence through a semiautonomous machine learning system for quantifying specimen atypia from urine cytology.
  Joshua J Levy, Natt Chan, Jonathan D Marotti, Nathalie J Rodrigues, A Aziz O Ismail, Darcy A Kerr, Edward J Gutmann, Ryan E Glass, Caroline P Dodge, Arief A Suriawinat...> ;Cancer Cytopathology. 2023 Sep 1
• 6 citations
  Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
  Michael Fatemi, Eric Feng, Cyril Sharma, Zarif Azher, Tarushii Goel, Ojas Ramwala, Scott M Palisoul, Rachael E Barney, Laurent Perreard, Fred W Kolling, Lucas A Salas,...> ;Journal of Pathology Informatics. 2023 Jan 1
• 1 citations
  Development of an interactive web dashboard to facilitate the reexamination of pathology reports for instances of underbilling of CPT codes.
  Jack Greenburg, Yunrui Lu, Shuyang Lu, Uhuru Kamau, Robert Hamilton, Jason Pettus, Sarah Preum, Louis Vaickus, Joshua Levy> ;Journal of Pathology Informatics. 2023 Jan 1
• 1 citations
  Video-Based Deep Learning to Detect Dyssynergic Defecation with 3D High-Definition Anorectal Manometry.
  Joshua J Levy, Christopher M Navas, Joan A Chandra, Brock C Christensen, Louis J Vaickus, Michael Curley, William D Chey, Jason R Baker, Eric D Shah> ;Digestive Diseases and Sciences. 2023 May 1
• 2 citations
  Uncovering additional predictors of urothelial carcinoma from voided urothelial cell clusters through a deep learning-based image preprocessing technique.
  Joshua J Levy, Xiaoying Liu, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann, Ryan E Glass, Caroline P Dodge, Arief A Suriawinata, Louis J Vaickus> ;Cancer Cytopathology. 2023 Jan 1
• 2 citations
  Large-scale longitudinal comparison of urine cytological classification systems reveals potential early adoption of The Paris System criteria.
  Joshua J Levy, Xiaoying Liu, Jonathan D Marotti, Darcy A Kerr, Edward J Gutmann, Ryan E Glass, Caroline P Dodge, Louis J Vaickus> ;Journal of the American Society of Cytopathology. 2022 Aug 17
• 9 citations
  Comparison of Machine-Learning Algorithms for the Prediction of Current Procedural Terminology (CPT) Codes from Pathology Reports.
  Joshua Levy, Nishitha Vattikonda, Christian Haudenschild, Brock Christensen, Louis Vaickus> ;Journal of Pathology Informatics. 2022 Jan 1
• 9 citations
  Using molecular testing to improve the management of thyroid nodules with indeterminate cytology: an institutional experience with review of molecular alterations.
  Ryan E. Glass, Jonathan D. Marotti, Darcy A. Kerr, Joshua J. Levy, Louis J. Vaickus, Edward J. Gutmann, Laura J. Tafe, Meredith J. Sorensen, Louise Davies, Xiaoying Liu> ;Journal of the American Society of Cytopathology. 2021 Aug 21
• 4 citations
  MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks.
  Joshua J. Levy, Youdinghuan Chen, Nasim Azizgolshani, Curtis L. Petersen, Alexander J Titus, Erika L. Moen, Louis J. Vaickus, Lucas A. Salas, Brock C. Christensen> ;NPJ Systems Biology and Applications. 2021 Aug 20
• 10 citations
  Atypia of undetermined significance in thyroid cytology: Nuclear atypia and architectural atypia are associated with different molecular alterations and risks of malig...
  Ryan E. Glass, Joshua J. Levy, Samaneh Motanagh, Louis J. Vaickus, Xiaoying Liu> ;Cancer Cytopathology. 2021 Aug 16
• 6 citations
  Fine needle aspiration of an intranodal follicular dendritic cell sarcoma: A case report with molecular analysis and review of the literature.
  Michael J. Andersen, Darcy A. Kerr, Mikhail Lisovsky, Louis J. Vaickus, Konstantinos Linos> ;Diagnostic Cytopathology. 2021 Feb 1
• 1 citations
  Using Satellite Images and Deep Learning to Identify Associations Between County-Level Mortality and Residential Neighborhood Features Proximal to Schools: A Cross-Sec...
  Joshua J. Levy, Rebecca M. Lebeaux, Anne G. Hoen, Brock C. Christensen, Louis J. Vaickus, Todd A. MacKenzie> ;Frontiers in Public Health. 2021 Jan 1
• 16 citations
  A large-scale internal validation study of unsupervised virtual trichrome staining technologies on nonalcoholic steatohepatitis liver biopsies.
  Joshua J. Levy, Nasim Azizgolshani, Michael J. Andersen, Arief A. Suriawinata, Xiaoying Liu, Mikhail Lisovsky, Bing Ren, Carly A. Bobak, Brock C. Christensen, Louis J....> ;Modern Pathology. 2021 Apr 1
• 26 citations
  Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks.
  Joshua J. Levy, Christian Haudenschild, Clark Barwick, Brock C. Christensen, Louis J. Vaickus> ;Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2020 Aug 3
• 21 citations
  A machine learning algorithm for simulating immunohistochemistry: development of SOX10 virtual IHC and evaluation on primarily melanocytic neoplasms.
  Christopher R. Jackson, Aravindhan Sriharan, Louis J. Vaickus> ;Modern Pathology. 2020 Apr 1
• 38 citations
  Evaluation of a Deep Neural Network for Automated Classification of Colorectal Polyps on Histopathologic Slides.
  Jason Wei, Arief A. Suriawinata, Louis J. Vaickus, Bing Ren, Xiaoying Liu, Mikhail Lisovsky, Naofumi Tomita, Behnaz Abdollahi, Adam S. Kim, Dale C. Snover, John A. Bar...> ;JAMA Network Open. 2020 Apr 1
• 24 citations
  Generative Image Translation for Data Augmentation in Colorectal Histopathology Images.
  Jerry Wei, Arief A. Suriawinata, Louis J. Vaickus, Bing Ren, Xiaoying Liu, Jason Wei, Saeed Hassanpour> ;Proceedings of Machine Learning Research. 2019 Dec 1
• 9 citations
  PathFlowAI: A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation in Digital Pathology.
  Joshua J. Levy, Lucas A. Salas, Brock C. Christensen, Aravindhan Sriharan, Louis J. Vaickus> ;Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2019 Dec 1
• 138 citations
  Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks
  Jason Wei, Laura J. Tafe, Yevgeniy A. Linnik, Louis J. Vaickus, Naofumi Tomita, Saeed Hassanpour> ;Scientific Reports. 2019 Mar 4
• 33 citations
  Automating the Paris System for urine cytopathology-A hybrid deep-learning and morphometric approach.
  Louis J. Vaickus, Arief A. Suriawinata, Jason Wei, Xiaoying Liu> ;Cancer Cytopathology. 2019 Feb 1
• 32 citations
  Identifying aerosolized cyanobacteria in the human respiratory tract: A proposed mechanism for cyanotoxin-associated diseases.
  Dominic N. Facciponte, Matthew W. Bough, Darius Seidler, James Carroll, Alix Ashare, Angeline S. Andrew, Gregory J. Tsongalis, Louis J. Vaickus, Patricia L. Henegan, T...> ;The Science of the Total Environment. 2018 Dec 15
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