MatthewWHahnMD

PubMed

• 31 citations
  New Approaches for Inferring Phylogenies in the Presence of Paralogs.
  Megan L. Smith, Matthew W. Hahn> ;Trends in Genetics. 2021 Feb 1
• 31 citations
  Genus-Wide Characterization of Bumblebee Genomes Provides Insights into Their Evolution and Variation in Ecological and Behavioral Traits.
  Cheng Sun, Jiaxing Huang, Yun Wang, Xiaomeng Zhao, Long Su, Gregg W C Thomas, Mengya Zhao, Xingtan Zhang, Irwin Jungreis, Manolis Kellis, Saverio Vicario, Igor V Shara...> ;Molecular Biology and Evolution. 2021 Jan 23
• 12 citations
  Determining the probability of hemiplasy in the presence of incomplete lineage sorting and introgression.
  Mark S. Hibbins, Matthew J. S. Gibson, Matthew W. Hahn> ;Elife. 2020 Dec 21
• 164 citations
  CAFE 5 models variation in evolutionary rates among gene families.
  Fábio K. Mendes, Dan Vanderpool, Ben Fulton, Matthew W. Hahn> ;Bioinformatics. 2021 Apr 1
• 39 citations
  Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression.
  Dan Vanderpool, Bui Quang Minh, Robert Lanfear, Daniel S.T. Hughes, Shwetha C. Murali, R. Alan Harris, Muthuswamy Raveendran, Donna M. Muzny, Mark S. Hibbins, Robert J...> ;Plos Biology. 2020 Dec 3
• 16 citations
  Radiation with reticulation marks the origin of a major malaria vector
  Scott T. Small, Frédéric Labbé, Neil F. Lobo, Lizette L. Koekemoer, Chadwick H. Sikaala, Daniel E. Neafsey, Matthew W. Hahn, Michael C. Fontaine, Nora J. Besansky> ;Proceedings of the National Academy of Sciences of the United States of America. 2020 Dec 1
• 9 citations
  Origins and Long-Term Patterns of Copy-Number Variation in Rhesus Macaques.
  Gregg W.C. Thomas, Richard J. Wang, Jelena Nguyen, R. Alan Harris, Muthuswamy Raveendran, Jeffrey Rogers, Matthew W. Hahn> ;Molecular Biology and Evolution. 2021 Apr 13
• 202 citations
  New Methods to Calculate Concordance Factors for Phylogenomic Datasets.
  Bui Quang Minh, Matthew W. Hahn, Robert Lanfear> ;Molecular Biology and Evolution. 2020 Sep 1
• 23 citations
  The ortholog conjecture revisited: the value of orthologs and paralogs in function prediction.
  Moses Stamboulian, Rafael F. Guerrero, Matthew W. Hahn, Predrag Radivojac> ;Bioinformatics. 2020 Jul 1
• 31 citations
  Paternal age in rhesus macaques is positively associated with germline mutation accumulation but not with measures of offspring sociability.
  Richard J. Wang, Gregg W.C. Thomas, Muthuswamy Raveendran, Alan Harris, Harshavardhan Doddapaneni, Donna M. Muzny, John P. Capitanio, Predrag Radivojac, Jeffrey Rogers...> ;Genome Research. 2020 May 27
• 102 citations
  Gene Content Evolution in the Arthropods
  Gregg W.C. Thomas, Elias Dohmen, Daniel S.T. Hughes, Shwetha C. Murali, Monica F. Poelchau, Karl M. Glastad, Clare A. Anstead, Nadia A. Ayoub, Philip J. Batterham, Mic...> ;Genome Biology. 2020 Jan 23
• 45 citations
  Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
  Robert M. Waterhouse, Sergey Aganezov, Yoann Anselmetti, Jiyoung Lee, Livio Ruzzante, Maarten J.M.F. Reijnders, Romain Feron, Sèverine Bérard, Phillip George, Matthew ...> ;BMC Biology. 2020 Jan 2
• 29 citations
  A Three-Sample Test for Introgression
  Matthew W. Hahn, Mark S. Hibbins> ;Molecular Biology and Evolution. 2019 Dec 1
• 19 citations
  The perils of intralocus recombination for inferences of molecular convergence.
  Fábio K. Mendes, Andrew Livera, Matthew W. Hahn> ;Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 2019 Jul 22
• 8 citations
  Referee: Reference Assembly Quality Scores.
  Gregg W.C. Thomas, Matthew W. Hahn> ;Genome Biology and Evolution. 2019 May 1
• 39 citations
  Association mapping desiccation resistance within chromosomal inversions in the African malaria vector Anopheles gambiae.
  Diego Ayala, Simo V. Zhang, Mathieu Chateau, Caroline Fouet, Isabelle Morlais, Carlo Costantini, Matthew W. Hahn, Nora J. Besansky> ;Molecular Ecology. 2019 Mar 1
• 22 citations
  The Timing and Direction of Introgression Under the Multispecies Network Coalescent.
  Mark S. Hibbins, Matthew W. Hahn> ;Genetics. 2019 Mar 1
• 7 citations
  Patterns of transposable element variation and clinality in Drosophila.
  Jeffrey R. Adrion, David J. Begun, Matthew W. Hahn> ;Molecular Ecology. 2019 Mar 1
• 86 citations
  The comparative genomics and complex population history of Papio baboons
  Jeffrey Rogers, Muthuswamy Raveendran, R. Alan Harris, Thomas Mailund, Kalle Leppälä, Georgios Athanasiadis, Mikkel H. Schierup, Jade Cheng, Kasper Munch, Jerilyn A. W...> ;Science Advances. 2019 Jan 1
• 3 citations
  The sequencing and interpretation of the genome obtained from a Serbian individual
  Wazim Mohammed Ismail, Kymberleigh A. Pagel, Vikas Pejaver, Simo V. Zhang, Sofia Casasa, Matthew Mort, David Neil Cooper, Matthew W. Hahn, Predrag Radivojac> ;Plos One. 2018 Dec 19
• 23 citations
  Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana).
  Mathieu Rouard, Gaëtan Droc, Guillaume Martin, Julie Sardos, Yann Hueber, Valentin Guignon, Alberto Cenci, Björn Geigle, Mark S. Hibbins, Nabila Yahiaoui, Franc-Christ...> ;Genome Biology and Evolution. 2018 Dec 1
• 30 citations
  Quantifying the risk of hemiplasy in phylogenetic inference
  Rafael F. Guerrero, Matthew W. Hahn> ;Proceedings of the National Academy of Sciences of the United States of America. 2018 Nov 27
• 60 citations
  Reproductive Longevity Predicts Mutation Rates in Primates.
  Gregg W.C. Thomas, Richard J. Wang, Arthi Puri, R. Alan Harris, Muthuswamy Raveendran, Daniel S.T. Hughes, Shwetha C. Murali, Lawrence E. Williams, Harsha Doddapaneni,...> ;Current Biology. 2018 Oct 8
• 7 citations
  Speciation genes are more likely to have discordant gene trees
  Richard J. Wang, Matthew W. Hahn> ;Evolution Letters. 2018 Aug 1
• 35 citations
  Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance.
  Meng Wu, Jamie L. Kostyun, Matthew W. Hahn, Leonie C. Moyle> ;Molecular Ecology. 2018 Aug 1
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