NaftaliKaminskiMD

PubMed

• Adaptive multi-interventional trial platform to improve patient care for fibrotic interstitial lung diseases.
  Leticia Kawano-Dourado, Tejaswini Kulkarni, Christopher J Ryerson, Pilar Rivera-Ortega, Bruno Guedes Baldi, Nazia Chaudhuri, Manuela Funke-Chambour, Anna-Maria Hoffman...> ;Thorax. 2024 Mar 6
• 2 citations
  Challenges and perspectives in computational deconvolution of genomics data.
  Kaminski, N., Lana X Garmire, Yijun Li, Qianhui Huang, Chuan Xu, Sarah A Teichmann, Naftali Kaminski, Matteo Pellegrini, Quan Nguyen, Andrew E Teschendorff> ;Nature Methods. 2024 Mar 1
• Mast-cell expressed membrane protein-1 is expressed in classical monocytes and alveolar macrophages in idiopathic pulmonary fibrosis and regulates cell chemotaxis, adh...
  Perrot, C., Karampitsakos, T., Unterman, A., Adams, T., Marlin, K., Arsenault, A., Zhao, A., Kaminski, N., Katlaps, G., Patel, K., Bandyopadhyay, D., Herazo-Maya, J., ...> ;American Journal of Physiology. Cell Physiology. 2024 Mar 1
• Anti-Inflammatory Roles of Type I Interferon Signaling in the Lung.
  Feng, J., Liu, Y., Kim, J., Ahangari, F., Bain, W., Jie, Z., Dela Cruz, C., Sharma, L., Kaminski, N.> ;American Journal of Physiology. Lung Cellular and Molecular Physiology. 2024 Feb 20
• Pulmonary Fibrosis Stakeholder Summit: A Joint NHLBI, Three Lakes Foundation, and Pulmonary Fibrosis Foundation Workshop Report.
  Kaminski, N., Montesi, S., Gomez, C., Beers, M., Brown, R., Chattopadhyay, I., Flaherty, K., Garcia, C., Gomperts, B., Hariri, L., Hogaboam, C., Jenkins, R., Kaminski,...> ;American Journal of Respiratory and Critical Care Medicine. 2024 Feb 15
• Genome-wide SNP-sex interaction analysis of susceptibility to idiopathic pulmonary fibrosis.
  Kaminski, N., Olivia C Leavy, Anne F Goemans, Amy D Stockwell, Richard J Allen, Beatriz Guillen-Guio, Tamara Hernandez-Beeftink, Ayodeji Adegunsoye, Helen L Booth, , P...> ;Medrxiv. 2024 Jan 15
• Dedifferentiated early postnatal lung myofibroblasts redifferentiate in adult disease.
  Rachana R Chandran, Taylor S Adams, Inamul Kabir, Eunate Gallardo-Vara, Naftali Kaminski, Brigitte N Gomperts, Daniel M Greif> ;Frontiers in Cell and Developmental Biology. 2024 Jan 1
• Challenges and Opportunities for Commercializing Technologies in the Pulmonary Arena: An Official American Thoracic Society Report.
  Kaminski, N., Vukmirovic, M., Benam, K., Rose, J., Turner, S., Magin, C., Lagares, D., Cohen, A., Kaminski, N., Hirota, J., Maher, T., Konigshoff, M., Mallampalli, R.,...> ;Annals of the American Thoracic Society. 2024 Jan 1
• Single-cell transcriptomic analysis of human pleura reveals stromal heterogeneity and informsmodels of mesothelioma.
  Kaminski, N., Joanna Obacz, Jose Antonio Valer, Reshma Nibhani, Taylor S Adams, Jonas C Schupp, Niki Veale, Amanah Lewis-Wade, Jasper Flint, John Hogan, Giuseppe Aresu...> ;The European Respiratory Journal. 2024 Jan 1
• Association study of human leukocyte antigen variants and idiopathic pulmonary fibrosis.
  Kaminski, N., Beatriz Guillen-Guio, Megan L Paynton, Richard J Allen, Daniel P W Chin, Lauren J Donoghue, Amy Stockwell, Olivia C Leavy, Tamara Hernandez-Beeftink, Car...> ;ERJ Open Research. 2024 Jan 1
• 1 citations
  Increased expression of CXCL6 in secretory cells drives fibroblast collagen synthesis and is associated with increased mortality in idiopathic pulmonary fibrosis.
  Bahudhanapati, H., Tan, J., Apel, R., Seeliger, B., Schupp, J., Li, X., Sullivan, D., Sembrat, J., Rojas, M., Tabib, T., Valenzi, E., Lafyatis, R., Mitash, N., Hernand...> ;The European Respiratory Journal. 2024 Jan 1
• Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  Zheng, Y., Schupp, J., Adams, T., Clair, G., Justet, A., Ahangari, F., Yan, X., Hansen, P., Carlon, M., Cortesi, E., Vermant, M., Vos, R., De Sadeleer, L., Rosas, I., ...> ;Research Square. 2023 Dec 18
• Somatic Mutations: The Next Frontier in Demystifying Chronic Obstructive Pulmonary Disease and Idiopathic Pulmonary Fibrosis?
  Xiting Yan, Naftali Kaminski, Kaminski, N.> ;American Journal of Respiratory and Critical Care Medicine. 2023 Dec 1
• Examination of eQTL Polymorphisms Associated with Increased Risk of Progressive Complicated Sarcoidosis in European and African Descent Subjects.
  Kaminski, N., Casanova, N., Camp, S., Gonzalez-Garay, M., Batai, K., Garman, L., Montgomery, C., Ellis, N., Kittles, R., Bime, C., Hsu, A., Holland, S., Lussier, Y., K...> ;European Journal of Respiratory Medicine. 2023 Dec 1
• 73 citations
  Distinguishing features of long COVID identified through immune profiling.
  Kaminski, N., Klein, J., Wood, J., Jaycox, J., Dhodapkar, R., Lu, P., Gehlhausen, J., Tabachnikova, A., Greene, K., Tabacof, L., Malik, A., Silva Monteiro, V., Silva, ...> ;Nature. 2023 Nov 1
• Mast-Cell Expressed Membrane Protein-1 (MCEMP1) is expressed in classical monocytes and alveolar macrophages in Idiopathic Pulmonary Fibrosis and regulates cell chemot...
  Carole Y Perrot, Theodoros Karampitsakos, Avraham Unterman, Taylor Adams, Krystin Marlin, Alyssa Arsenault, Amy Zhao, Gundars Katlaps, Kapilkumar Patel, Debabrata Band...> ;Biorxiv. 2023 Oct 10
• 1 citations
  Alveolar Vascular Remodeling in Nonspecific Interstitial Pneumonia: Replacement of Normal Lung Capillaries with-Positive Endothelial Cells.
  Jonas C Schupp, Edward P Manning, Maurizio Chioccioli, Jan C Kamp, Leonard Christian, Changwan Ryu, Erica Herzog, Mark P Kühnel, Antje Prasse, Naftali Kaminski, Danny ...> ;American Journal of Respiratory and Critical Care Medicine. 2023 Oct 1
• 2 citations
  SRC and TKS5 mediated podosome formation in fibroblasts promotes extracellular matrix invasion and pulmonary fibrosis.
  Ilianna Barbayianni, Paraskevi Kanellopoulou, Dionysios Fanidis, Dimitris Nastos, Eleftheria-Dimitra Ntouskou, Apostolos Galaris, Vaggelis Harokopos, Pantelis Hatzis, ...> ;Nature Communications. 2023 Sep 21
• When Development of the Alveolar Gas Exchange Unit Fails: Universal Single-Cell Lessons from Rare Monogenic Disorders.
  Jonas C Schupp, Naftali Kaminski, Kaminski, N.> ;American Journal of Respiratory and Critical Care Medicine. 2023 Sep 15
• 4 citations
  iDESC: identifying differential expression in single-cell RNA sequencing data with multiple subjects.
  Yunqing Liu, Jiayi Zhao, Taylor S Adams, Ningya Wang, Jonas C Schupp, Weimiao Wu, John E McDonough, Geoffrey L Chupp, Naftali Kaminski, Zuoheng Wang, Xiting Yan, Kamin...> ;BMC Bioinformatics. 2023 Aug 22
• Integrative genetic and genomic networks identify microRNA associated with COPD and ILD.
  Kaminski, N., Ana B Pavel, Carly Garrison, Lingqi Luo, Gang Liu, Daniel Taub, Ji Xiao, Brenda Juan-Guardela, John Tedrow, Yuriy O Alekseyev, Ivana V Yang, Mark W Gerac...> ;Scientific Reports. 2023 Aug 11
• 3 citations
  Integrative analyses for the identification of idiopathic pulmonary fibrosis-associated genes and shared loci with other diseases.
  Ming Chen, Yiliang Zhang, Taylor Adams, Dingjue Ji, Wei Jiang, Louise V Wain, Michael Cho, Naftali Kaminski, Hongyu Zhao, Kaminski, N.> ;Thorax. 2023 Aug 1
• Association study of human leukocyte antigen (HLA) variants and idiopathic pulmonary fibrosis.
  Kaminski, N., Guillen-Guio, B., Paynton, M., Allen, R., Chin, D., Donoghue, L., Stockwell, A., Leavy, O., Hernandez-Beeftink, T., Reynolds, C., Cullinan, P., Martinez,...> ;Medrxiv. 2023 Jul 24
• 6 citations
  COVID-19 annual update: a narrative review.
  Michela Biancolella, Vito Luigi Colona, Lucio Luzzatto, Jessica Lee Watt, Giorgio Mattiuz, Silvestro G Conticello, Naftali Kaminski, Ruty Mehrian-Shai, Albert I Ko, Gr...> ;Human Genomics. 2023 Jul 24
• 2 citations
  A statistical framework to identify cell types whose genetically regulated proportions are associated with complex diseases.
  Wei Liu, Wenxuan Deng, Ming Chen, Zihan Dong, Biqing Zhu, Zhaolong Yu, Daiwei Tang, Maor Sauler, Chen Lin, Louise V Wain, Michael H Cho, Naftali Kaminski, Hongyu Zhao,...> ;Plos Genetics. 2023 Jul 1
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Journal Articles

• Reducing Protein Oxidation Reverses Lung Fibrosis  
  David J Seward, Ralph C Budd, Charles G Irvin, Kevin K Brown, Kelly J Butnor, Naftali Kaminski, Nature
• Nrf2 Amplifies Oxidative Stress via Induction of Klf9  
  Zucker SN, Fink EE, Bagati A, Mannava S, Bianchi-Smiraglia A, Bogner PN, Wawrzyniak J, Foley C, Leonova K, Grimm M, Moparthy K, Ionov Y, Wang J, Liu S, Sexton S, Kande..., Molecular Cell, 1/1/2014
• Serum Lysyl Oxidase Like-2 Levels and Idiopathic Pulmonary Fibrosis Disease Progression  
  Chien JW, Richards TJ, Gibson KF, Zhang Y, Lindell KO, Shao L, Lyman SK, Adamkewicz JI, Smith V, Kaminski N, O'Riordan T, Eur Respir J, 1/31/2013
• Genetic Variants Associated with Idiopathic Pulmonary Fibrosis Susceptibility and Mortality: A Genome-wide Associate Study  
  Noth I, Zhang Y, Ma, S-F, Flores C, Barber M, Huang G, Broderick SM, Wae M, Hysi P, Sciurba J, Richards TJ, JuanGuardela B, Vij R, Han MLK, Martinez F, Kossen K, Seiwe..., The Lancet, 1/17/2013
• The Isolation and Characterization of Renal Cancer Initiating Cells from Human Wilms' Tumour Xenografts Unveils New Therapeutic Targets  
  Pode-Shakked N, Shukrun R, Mark-Danieli M, Tsvetkov P, Bahar S, Pri-Chen S, Goldstein RS, Rom-Gross E, Mor Y, Fridman E, Meir K, Simon A, Magister M, Kaminski N, Goldm..., EMBO Mol Med, 1/1/2013
• miR-199a-5p Is Upregulated during Fibrogenic Response to Tissue Injury and Mediates TGFbeta-Induced Lung Fibroblast Activation by Targeting Caveolin-1  
  Lino Cardenas CL, Henaoui IS, Courcot E, Roderburg C, Cauffiez C, Aubert S, Copin, M-C, Wallaert B, Glowacki F, Dewaeles E, Milosevic J, Maurizio J, Tedrow J, Marcet B..., PLoS Genet, 1/1/2013
• Genome-wide Association Study Identifies Multiple Susceptibility Loci for Pulmonary Fibrosis  
  Fingerlin TE, Murphy E, Zhang W, Peljto AL, Brown K, Steele MP, Loyd JE, Cosgrove GP, Lynch D, Groshong S, Collard H, Kaminski N, Zhang Y, Gibson KF, Lancaster LH, Cog..., Nature Genetics, 1/1/2013
• Association between the MUC5B Promoter Polymorphism and Survival in Patients with Idiopathic Pulmonary Fibrosis  
  Peljto AL, Zhang Y, Fingerlin T, Fan Ma S, Garcia JGN, Richards TJ, Silveria LJ, Lindell KO, Steele MP, Loyd JE, Gibson KF, Seibold, MA, Brown KK, Talbert JL, Markin C..., JAMA, 1/1/2013
• Genome-wide Association Study Identifies Multiple Susceptibility Loci for Pulmonary Fibrosis  
  Fingerlin TE, Murphy E, Zhang W, Peljto AL, Brown KK, Steele MP, Loyd JE, Cosgrove GP, Lynch D, Groshong S, Collard HR, Wolters PJ, Bradford WZ, Kossen K, Seiwert SD, ..., Nat Genet, 1/1/2013
• Omics  
  Kass, D and Kaminski N, European Respiratory Monograph: Outcomes in Clinicl Trials, 1/1/2013
• Integrative Assessment of Chlorine-induced Acute Lung Injury in Mice  
  Leikauf GD, Pope-Varsalona H, Concel VJ, Liu P, Bein K, Berndt A, Martin TM, Ganguly K, Jang AS, Brant KA, Dopico RA Jr, Upadhyay S, Di YP, Li Q, Hu Z, Vuga LJ, Medved..., Am J Respir Cell Mol Biol, 1/23/2012
• Epigenomics of Idiopathic Pulmonary Fibrosis - Evaluating the First Steps  
  Rabinovich EI, Selman M, Kaminski N, Am J Respir Crit Care Med, 1/15/2012
• Zyxin Is a TGF-Beta/Smad3 Target Gene That Regulates Lung Cancer Cell Motility via Integrin Alphalpha5Betaeta1  
  Mise N, Savai R, Yu H, Schwarz J, Kaminski N, and Eickelberg O, J Biol Chem, 1/9/2012
• An R package Suite for Microarray Meta-analysis in Quality Control, Differentially Expressed Gene Analysis and Pathway Enrichment Detection  
  Wang X, Kang DD, Shen K, Song C, Lu S, Chang LC, Liao SG, Huo Z, Tang S, Kaminski N, Sibille E, Lin Y, Li J, Tseng GC, Bioinformatics, 1/3/2012
• Allele Specific Transactivation of Matrix Metalloproteinase 7 by FOXA2 and Correlation with Plasma Levels in Idiopathic Pulmonary Fibrosis  
  Richards TJ, Park C, Chen, Y, Gibson KF, Di YP, Pardo A, Watkins S, Choi AMK, Selman M, Pilewski, J, Kaminski N, Zhang Y, Am J Physiol Lung Cell Mol Physiol, 1/1/2012
• Global Methylation Patterns in Idiopathic Pulmonary Fibrosis  
  Rabinovich EI, Kapetanaki MG, Steinfeld I, Gibson KF, Pandit KV, Yu G, Yakhini Z, Kaminski N, PLOS One, 1/1/2012
• Cytokine-Like Factor 1 Gene Expression Is Enriched in Idiopathic Pulmonary Fibrosis and Drives the Accumulation of CD4(+) T Cells in Murine Lungs: Evidence for an Anti...  
  Kass DJ, Yu G, Loh KS, Savir A, Borczuk A, Kahloon R, Juan-Guardela B, Deiuliis G, Tedrow J, Choi J, Richards T, Kaminski N, Greenberg SM, Am J Pathol, 1/1/2012
• Novel Modeling of Combinatorial miRNA Targeting Identifies SNP with Potential Role in Bone Density  
  Coronnello C, Hartmaier R, Arora A, Huleihel L, Arshi A, Pandit KV, Bais AS, Butterworth M, Kaminski N, Stormo GD, Oesterreich S, Benos PV, PLoS Comput Biol, 1/1/2012
• Biomarkers in Idiopathic Pulmonary Fibrosis  
  Zhang Y, Kaminski N, Curr Opin Pulm Med, 1/1/2012
• Towards Systems Biology of Pulmonary Hypertension  
  Ahmad, F, Champion H, Kaminski N, Circulation, 1/1/2012
• A Variant in the Promoter of MUC5B and Idiopathic Pulmonary Fibrosis  
  Zhang Y, Noth I, Garcia JG, Kaminski N, NEJM, 1/21/2011
• Finding Subtypes of Transcription Factor Motif Pairs with Distinct Regulatory Roles  
  Bais AF, Kaminski N, Benos PV, Nucleic Acids Research, 1/12/2011
• MetaQC: Objective Quality Control and Inclusion/exclusion Criteria for Meta-analysis  
  Kang DD, Sibille E, Kaminski N and Tseng GC, Nucleic Acids Research, 1/1/2011
• ATS Patient Information Series: Idiopathic Pulmonary Fibrosis (IPF)  
  Lindell KO, Kaminski N, Gibson KF, Lareau S, Fahy B, & Swigris, JJ, Am J Respir Crit Care Med, 1/1/2011
• CD28 Down-regulation on Circulating CD4-T-cells is Associated with Poor Prognoses of Patients with Idiopathic Pulmonary Fibrosis  
  Gilani SE, Vuga LJ, Lindell KO, Gibson KF, Xue J, Lindsay EK, Kaminski N, Valentine VG, George MP, Steele C, Duncan SR, PLoS One, 1/29/2010
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Books/Book Chapters

• Textbook of Interstitial Lung Disease 
  Chapter: Genomics of Lung Diseases 
  Richards TJ, Kaminski NEditors: Schwartz and King.Edition 5th,2009
• Fibrosis Research: Methods and Protocols 
  Chapter: Analysis of Microarray Experiments in Pulmonary Fibrosis 
  Page 333 - 358Dave´ N and Kaminski NEditors: Drs. John Varga, David A. Brenner and Sem H. Phan.Humana Press2005

Lectures

• Treatment target - non coding RNAs in IPF 
  Quebec, Canada - 1/1/2014
• Genomic Research in Sarcoidosis: the GRADS Trial 
  University of Ohio - 1/1/2014
• Pulmonary Fibrosis: New Biomarkers and Mechanisms 
  University of Tennessee Chattanooga - 1/1/2014
• Personalized Medicine - noncoding RNAs and Genomics in Lung Fibrosis 
  University of Birmingham Aalabama - 1/1/2014
• Epigenetic Regulation and New Molecular Targets in Chronic Lung Disease 
  1/1/2014
• MicroRNAs in Lung Fibrosis 
  Keystone, Colorado - 1/1/2014
• Interstitial Lung Disease 
  Albert Medical School of Brown University, Providence, RI - 1/1/2013
• Non Coding RNA in Pulmonary Fibrosis 
  Yale University School of Medicine, New Haven, CT - 1/1/2013
• Coding and Non-Coding in Lung Fibrosis 
  Yale University School of Medicine, New Haven, CT - 1/1/2013
• Impact of Genomics on the Understanding and Management of Pulmonary Fibrosis 
  Yale University School of Medicine, New Haven, CT - 1/1/2013
• The New Frontier: Small and Large Noncoding RNAs in Lung Fibrosis 
  Yale University School of Medicine, New Haven, CT - 1/1/2013
• The Brave New World of IPF: MicroRNAs, Developmental Pathways and Peripheral Blood Biomarkers 
  Munich, Germany - 1/1/2013
• Focus on Interstitial Lung Disease: Genomics and Mechanisms of Lung Fibrosis 
  Frankfurt Germany - 1/1/2013
• Coding and Non Coding RNAs in IPF - A Brave New World 
  1/1/2013
• Towards Implementing Personalized Medicine in Lung Fibrosis 
  University College of London - 1/1/2013
• New Biomarkers in IPF 
  Milano Italy - 1/1/2013
• Impact of Genomics on Management of Patients with IPF 
  Siena University Hospital, Siena, Italy - 1/1/2013
• Genomics of Idiopathic Pulmonary Fibrosis 
  Philadelphia, PA - 1/1/2013
• CON: The Epithelial Mesenchymal Interface Is the Most Promising Target for Novel Therapies in IPF 
  Philadelphia, PA - 1/1/2013
• Expression Profiling and Systems Biology 
  Philadelphia, PA - 1/1/2013
• Expression Profiling and Micro RNA in Asthma and COPD 
  Philadelphia, PA - 1/1/2013
• Omics and Beyond 
  Philadelphia, PA - 1/1/2013
• Genomics Guided Management of Chronic Lung Disease - Are We There Yet? 
  University, Pittsburgh PA - 1/1/2013
• Journey to Success 
  University of Pittsburgh, Pittsburgh, PA - 1/1/2013
• Interstitial Pulmonary Fibrosis 
  Seven Springs Resort, Donegal, PA - 1/1/2013
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