ThomasLBauerMDFACS, MBA

PubMed

• 193 citations
  Proteogenomic characterization of pancreatic ductal adenocarcinoma
  Liwei Cao, Chen Huang, Daniel Cui Zhou, Yingwei Hu, T. Mamie Lih, Sara R. Savage, Karsten Krug, David J. Clark, Michael Schnaubelt, Lijun Chen, Felipe da Veiga Leprevo...> ;Cell. 2021 Sep 16
• 134 citations
  A proteogenomic portrait of lung squamous cell carcinoma
  Shankha Satpathy, Karsten Krug, Pierre M. Jean Beltran, Sara R. Savage, Francesca Petralia, Chandan Kumar-Sinha, Yongchao Dou, Boris Reva, M. Harry Kane, Shayan C. Ava...> ;Cell. 2021 Aug 5
• 6 citations
  Treatment for bilateral diaphragmatic dysfunction using phrenic nerve reconstruction and diaphragm pacemakers.
  Matthew R. Kaufman, Thomas Bauer, Raymond P. Onders, David P Brown, Eric I. Chang, Kristie Rossi, Andrew I. Elkwood, Ethan Paulin, Reza Jarrahy> ;Interactive Cardiovascular and Thoracic Surgery. 2021 May 10
• 269 citations
  Proteogenomic and metabolomic characterization of human glioblastoma
  Liang-Bo Wang, Alla Karpova, Marina A. Gritsenko, Jennifer E. Kyle, Song Cao, Yize Li, Dmitry Rykunov, Antonio Colaprico, Joseph H. Rothstein, Runyu Hong, Vasileios St...> ;Cancer Cell. 2021 Apr 12
• 324 citations
  Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
  Michael A. Gillette, Shankha Satpathy, Song Cao, Saravana M. Dhanasekaran, Suhas Vasaikar, Karsten Krug, Francesca Petralia, Yize Li, Wen-Wei Liang, Boris Reva, Azra K...> ;Cell. 2020 Jul 9
• 1 citations
  Reply to Comment on 'Volatile biomarker in breath predicts lung cancer and pulmonary nodules'.
  Michael Phillips, Thomas L. Bauer, Harvey I. Pass> ;Journal of Breath Research. 2020 Jan 24
• 17 citations
  A volatile biomarker in breath predicts lung cancer and pulmonary nodules.
  Michael Phillips, Thomas L. Bauer, Harvey I. Pass> ;Journal of Breath Research. 2019 Jun 19
• 21 citations
  A Gene Expression Classifier from Whole Blood Distinguishes Benign from Malignant Lung Nodules Detected by Low-Dose CT.
  Andrew V. Kossenkov, Rehman Qureshi, Noor Dawany, Jayamanna Wickramasinghe, Qin Liu, R. Sonali Majumdar, Celia Chang, Sandy Widura, Trisha Kumar, Wenhwai Horng, Eric K...> ;Cancer Research. 2019 Jan 1
• 31 citations
  Computed Tomography Screening for Lung Cancer: Mediastinal Lymph Node Resection in Stage IA Nonsmall Cell Lung Cancer Manifesting as Subsolid and Solid Nodules.
  Raja M. Flores, Daniel G. Nicastri, Thomas L. Bauer, Ralph W. Aye, Shahriyour Andaz, Leslie J. Kohman, Barry Sheppard, William Mayfield, Richard J. Thurer, Robert J. K...> ;Annals of Surgery. 2017 May 1
• 442 citations
  Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma
  Lauren Fishbein, Ignaty Leshchiner, Vonn Walter, Ludmila Danilova, A. Gordon Robertson, Amy R. Johnson, Tara M. Lichtenberg, Bradley A. Murray, Hans K. Ghayee, Tobias ...> ;Cancer Cell. 2017 Feb 13
• Erratum to: Long-Term Follow-Up after Phrenic Nerve Reconstruction for Diaphragmatic Paralysis: A Review of 180 Patients.
  Matthew R Kaufman, Andrew I Elkwood, David Brown, John Cece, Catarina Martins, Thomas Bauer, Jason Weissler, Kameron Rezzadeh, Reza Jarrahy> ;Journal of Reconstructive Microsurgery. 2017 Jan 1
• 12 citations
  Bronchoscopy: Diagnostic and Therapeutic for Non–Small Cell Lung Cancer
  Thomas L. Bauer, David B. Berkheim> ;Surgical Oncology Clinics of North America. 2016 Jul 1
• 28 citations
  Blinded Validation of Breath Biomarkers of Lung Cancer, a Potential Ancillary to Chest CT Screening
  Michael Phillips, Thomas L. Bauer, Renee N. Cataneo, Cassie Lebauer, Mayur Mundada, Harvey I. Pass, Naren Ramakrishna, William N. Rom, Eric Vallières> ;Plos One. 2015 Dec 23
• 2002 citations
  The Molecular Taxonomy of Primary Prostate Cancer
  Adam Abeshouse, Jaeil Ahn, Rehan Akbani, Adrian Ally, Samirkumar B. Amin, Christopher D. Andry, Matti Annala, Armen Aprikian, Joshua Armenia, Arshi Arora, J. Todd Auma...> ;Cell. 2015 Nov 5
• 14 citations
  Epithelioid inflammatory myofibroblastic sarcoma: a case report.
  Daniel E. Sarmiento, Jessica A. Clevenger, Gregory A. Masters, Thomas L. Bauer, Brian Nam> ;Journal of Thoracic Disease. 2015 Oct 31
• 12 citations
  Early Detection of Lung Cancer with Meso Tetra (4-Carboxyphenyl) Porphyrin-Labeled Sputum
  Lara Patriquin, Daniel T. Merrick, David Hill, Richard Holcomb, Madeleine E. Lemieux, Gordon Bennett, Bijal Karia, Vivienne I. Rebel, Thomas Bauer> ;Journal of Thoracic Oncology. 2015 Sep 1
• 243 citations
  ER stress regulates myeloid-derived suppressor cell fate through TRAIL-R–mediated apoptosis
  Thomas Condamine, Vinit Kumar, Indu Ramachandran, Je In Youn, Esteban Celis, Niklas Finnberg, Wafik S. El-Deiry, Rafael Winograd, Robert H. Vonderheide, N R English, S...> ;The Journal of Clinical Investigation. 2014 Jun 2
• 12 citations
  Elimination of socioeconomic and racial disparities related to lung cancer: closing the gap at a high volume community cancer center.
  Michael Z. Caposole, Kaylee Miller, Jehovah-Nissi Kim, Nancy A. Steward, Thomas L. Bauer> ;Surgical Oncology. 2014 Jun 1
• Solitary pulmonary nodules.
  M. Blair Marshall, Scott J. Swanson, Raja M. Flores, Thomas L. Bauer> ;Seminars in Thoracic and Cardiovascular Surgery. 2014 Jun 1
• 49 citations
  Balancing curability and unnecessary surgery in the context of computed tomography screening for lung cancer
  Raja M. Flores, Thomas L. Bauer, Ralph W. Aye, Shahriyour Andaz, Leslie J. Kohman, Barry Sheppard, William Mayfield, Richard Thurer, M. Smith, Robert J. Korst, Michael...> ;The Journal of Thoracic and Cardiovascular Surgery. 2014 May 1
• Community-based physicians and hospitals need to participate in clinical trials.
  Thomas L. Bauer, Judy C. Boughey> ;Bulletin of the American College of Surgeons. 2014 Apr 1
• 242 citations
  Sublobar resection is equivalent to lobectomy for clinical stage 1A lung cancer in solid nodules.
  Nasser K. Altorki, Rowena Yip, Takaomi Hanaoka, Thomas L. Bauer, Ralph W. Aye, Leslie J. Kohman, Barry Sheppard, Richard Thurer, Shahriyour Andaz, M. Smith, William Ma...> ;The Journal of Thoracic and Cardiovascular Surgery. 2014 Feb 1
• 1 citations
  Invited Commentary on ''Thoraco-pleuro-pneumonectomy (TPP) with Riblike Reconstruction for Recurrent Thoracic Sarcomas'' by A. Gronchi et al., (ASO-2013-09-1533.R1)
  Thomas L. Bauer, David B. Berkheim> ;Annals of Surgical Oncology. 2014 Jan 23
• 3736 citations
  Comprehensive molecular profiling of lung adenocarcinoma: The cancer genome atlas research network
  Bryant, A. S., , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ...> ;Nature. 2014 Jan 1
• 5 citations
  An immersive surgery training system with live streaming capability.
  Yang Yang, Xinqing Guo, Zhan Yu, Karl V. Steiner, Kenneth E. Barner, Thomas L. Bauer, Jingyi Yu> ;Studies in Health Technology and Informatics. 2014 Jan 1
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Journal Articles

• Dirofilaria (Dog Heart Worm): AN uncommon cause of the Benign Pulmonary Nodule  
  V Bustillo-Aruca, MZ Caposole, and TL Bauer, Surgical Infections, 1/1/2015
• Early Detection of Lung Cancer with Meso Tetra (4-Carboxyphenyl) Porphyrin-Labeled Sputum  
  L Patriquin, MD DT. Merrick, MD,D Hill, MD, R.G. Holcomb, PhD, ME Lemieux, PhD,G Bennett, B Karia, VI Rebel, MD, PhD, and T Bauer II, MD, J Thor Oncology, 1/1/2015
• Epithelioid Inflammatory Myofibroblastic Sarcoma: A Case Report  
  Sarmiento DE, Clevenger JA, Masters GA, Bauer TL, Nam BT, J Thorac Dis, 1/1/2015
• Blinded Validation of Breath Biomarkers of Lung Cancer, a Potential Ancillary to Chest CT Screening  
  Phillips M, Bauer TL, Cataneo RN, Lebauer C, Mundada M, et al, PLoS ONE, 1/1/2015
• The impact of the regimen of screening on lung cancer cure: a comparison of I-ELCAP and NLST  
  Yip, Rowena; Henschke, Claudia I.; Bauer TL Yankelevitz, David F.; Boffetta, Paolo; Smith, James P.; The International Early Lung Cancer Investigators, Euro J Ca Prevention, 1/1/2015
• CT screening for lung cancer: Importance of emphysema for never smokers and smokers for the I-ELCAP Investigators  
  Henschke, C, Yip R et al, Lung Cancer, 1/1/2015
• Interventional Bronchoscopy Chapter  
  D Berkheim and TL Bauer, Surgical Oncology Clinic of North America, 1/1/2015
• Phrenic Nerve Reconstruction of Diaphragmatic Paralysis and Ventilator Dependency  
  M Kaufman, TL Bauer et al, Rehabilitative Surgery, 1/1/2015
• Diversity of Lung Adenocarcinoma Revealed by Integrative Molecular Profiling  
  TL Bauer, Nature, 1/31/2014
• ER Stress Response Regulates the Fate of Myeloid-derived suppressor cells through TRAIL receptors mediated apoptosis in cancer  
  T Condamine, V Kumar, IR Ramachandran, J Youn, E Celis, N Finnberg, WS El-Deiry, R Winograd, RH Vonderheide, N English, SC Knight, H Yagita, JC McCaffrey, S Antonia, N..., Journal of Clinical Investigation, 1/1/2014
• An Immersive Surgery Training System with Live Streaming Capacity  
  Y Yang, X Guo, Z Tu, KV Steiner, KE Barner, TL Bauer, and J Yu, Stud health Technolo Inform, 1/1/2014
• Editorial on Thoracopneumonectomy for Sarcoma, Indication and Reconstruction  
  Berkheim D and Bauer TL, Ann Surg Oncol, 1/1/2014
• Smoking Cessation among current smokers following enrollment in a lung screening program  
  C Henscke, R Yip, J Cervera, J Zuleta, H Roberts, TL Bauer, C Aylesworth, B Irvey and D Yankelevitz, Cancer Epidemiology, Biomarkers & Prevention, 1/1/2014
• CT Screening for Lung Cancer: Update of Definition of Positive Test Result and its Implications  
  CI Henschke, R Yip, DF Yankelvitz, , TL Bauer, JP Smith and I-ELCAP Investigators, Annals of Internal Medicine, 1/1/2013
• Secondhand Tobacco Smoke in never Smokers is a Signifianct Risk Factor for Coronary Artery Calicification  
  DF Yankelevitz, CI Henschke, R Yip, P Boffetta, J Shemesh, MD Cham, J Narula, HS Hecht and IELCAP investigators, Journal American College of Cardiology Imaging, 1/1/2013
• A Portable Immersive Surgery Training System Using RGB-D Sensors  
  Z Guo, LD Lopez, Z Yu, SV KV Steiner, KE Barner, TL Bauer and J Yu, Stud health Technolo Inform, 1/1/2013
• Sub-lobar Resection is Equivalent to Lobectomy for Clinical Stage 1A Lung Cancer in Solid Nodules  
  NK Altorki, R Yip, T Hanaoka, T Bauer, R Aye, L Kohman, B Sheppard, et al, J Thoracic and Cardiovascular Surgery, 1/1/2013
• Balancing curability and unnecessary surgery in the context of computed tomography screening for lung cancer  
  R Flores, T Bauer, R Aye, S Andaz et al, J Thorac Cardiovasc Surg, 1/1/2013
• Phase II proof-of-concept study of pazopanib monotherapy in treatment-naive patients with stage I/II resectable non-small-cell lung cancer  
  N Altorki, ME Lane, T Bauer, PC Lee, M Guarino, H Pass, E Felip, N Peylan-Ramu, A Gurpide, F Grannis, J Mitchell, S Tachdjian, S Swann, A Huff, DF Roychowdhury, A Ree..., J. Clinical Oncology, 1/1/2010
• Rich Oligonucleotides Alter Cell Cycle Progression and Induce Apoptosis Specifically in OE19 Esophageal Tumor Cells  
  Schwartz, TR, Vasta CA, Bauer TL, Parekh-Olmedo H, Kmiec EB, Oligonucleotides, 1/1/2008
• Estimation of Ground-Glass Opacity Measurement in CT Lung Images  
  Y Zheng, C Kambhamettu, J Yu, T Bauer, K Steiner, Medical Image Computing and Computer Intervention-MICCAI, 1/1/2008
• Assessing the Impact of Smoke-related Illness on Smoking Cessation Efforts  
  A Margules, NA. Steward, RN, A Cephas, and TL Bauer, MD, Delaware Medical Journal, 1/1/2007
• CT Screening for Lung Cancer: The relationship of disease stage to tumor size  
  International Early Lung Cancer Action Program Investigators, Archives of Internal Medicine, 1/1/2006
• Women’s Susceptibility to Tobacco Carcinogens: an Update  
  International Early Lung Cancer Action Program Investigators, JAMA, 1/1/2006
• Survival of Patients with Stage I Lung cancer Detected on CT Screening  
  International Early Lung Cancer Action Program Investigators, NEJM, 1/1/2006
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Books/Book Chapters

• Operative Standards for Cancer Surgery 
  Chapter: Lung Chapter 
  K Amer, F Baciewicz, TL Bauer et alEditors: Wolters Kluwer.Philadelphia, PA2015
• Shields Thoracic Surgery 
  Chapter: Esophageal Cancer and Lymph Nodes Chapter 
  TL BauerEdition 7th,2015
• Yearbook in Oncology 
  Bauer TLElsevier, Philadelphia, PA2009
• Surgical Directives: Pediatric Surgery 
  Chapter: Nontraditional Central Venous Access 
  Page 61 - 70Thomas L. Bauer and Philip J. WolfsonEditors: Peter Mattei.Lippincott Williams and Wilkins2003
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Abstracts/Posters

• An Immersive Surgery Training System with Live Streaming Capacity
  Y Yang, X Guo, Z Tu, KV Steiner, KE Barner, TL Bauer, and J Yu, Proceedings MMVR, 1/1/2014
• CT Screening for Lung Cancer: Update of Definition of Positive Test Result and its Implications
  CI Henschke, R Yip, DF Yankelvitz, JP Smith and I-ELCAP Investigators, Annals of Internal Medicine, 1/1/2013
• Secondhand Tobacco Smoke in never Smokers is a Signifianct Risk Factor for Coronary Artery Calicification
  DF Yankelevitz, CI Henschke, R Yip, P Boffetta, J Shemesh, MD Cham, J Narula, HS Hecht and IELCAP investigators, Journal American College of Cardiology Imaging, 1/1/2013
• A Portable Immersive Surgery Training System Using RGB-D Sensors
  Z Guo, LD Lopez, Z Yu, SV KV Steiner, KE Barner, TL Bauer and J Yu, Proceedings of MMVR, 1/1/2013
• Sub-lobar Resection is Equivalent to Lobectomy for Clinical Stage 1A Lung Cancer in Solid Nodules
  NK Altorki, R Yip, T Hanaoka, T Bauer, R Aye, L Kohman, B Sheppard, et al, J Thoracic and Cardiovascular Surgery, 1/1/2013
• Balancing curability and unnecessary surgery in the context of computed tomography screening for lung cancer
  R Flores, T Buaer, R Aye, S Andaz et al, J Thorac Cardiovasc Surg, 1/1/2013
• Phase II proof-of-concept study of pazopanib monotherapy in treatment-naive patients with stage I/II resectable non-small-cell lung cancer
  N Altorki, ME Lane, T Bauer, PC Lee, M Guarino, H Pass, E Felip, N Peylan-Ramu, A Gurpide, F Grannis, J Mitchell, S Tachdjian, S Swann, A Huff, DF Roychowdhury, A Ree..., J. Clinical Oncology, 1/1/2010
• G-Rich Oligonucleotides Alter Cell Cycle Progression and Induce Apoptosis Specifically in OE19 Esophageal Tumor Cells
  Schwartz, TR, Vasta CA, Bauer TL, Parekh-Olmedo H, Kmiec EB, Oligonucleotides, 1/1/2008
• Estimation of Ground-Glass Opacity Measurement in CT Lung Images
  Y Zheng, C Kambhamettu, J Yu, T Bauer, K Steiner, Medical Image Computing and Computer Intervention-MICCAI, 1/1/2008
• Curative gastrectomy for adenocarcinoma performed at a major community-based teaching hospital results in good outcomes
  J. J. Bennett, K. M. Kattepogu, T. L. Bauer, R. Z. Abdel-Misih, B. Panasuk, N. J. Petrelli, Gastrointestinal Symposium, Orlando, FL, 1/1/2008
• Preoperative treatment with pazopanib (GW786034) a multikinase angiogenesis inhibitor in early stage non-small cell lung cancer (NSCLC): a proof-of-concept phase II study
  N Altorki, M Guarino, P lee, H Pass, E Filip, T Bauer et al, ASCO, 1/1/2008
• A Computationally Efficient Scheme for Interactive Matting
  Yuanjie Zheng, Chandra Kambhamettu, Jingyi Yu, Thomas Bauer, Karl Steiner, FuzzyMatte, CVPR, IEEE Computer Society Conf. on Computer Vision and Pattern Recognition, 1/1/2008
• A Cephas and. Assessing the Impact of Smoke-related Illness on Smoking Cessation Efforts
  NA. Steward, RN, TL Bauer, MD, A Margules, Delaware Medical Journal, 1/1/2007
• Virtual Bronchoscopy – Clinical Applications and Limitations
  TL Bauer and KV Steiner, Medical Oncology Clinics of North America, 1/1/2007
• Characteristics of cancers diagnosed on repeat screening
  C Henschke and I-ELCAP Investigators, RSNA, 1/1/2007
• CT Screening for Lung Cancer: The relationship of disease stage to tumor size
  International Early Lung Cancer Action Program Investigators, Archives of Internal Medicine, 1/1/2006
• Women’s Susceptibility to Tobacco Carcinogens: an Update
  International Early Lung Cancer Action Program Investigators, JAMA, 1/1/2006
• Survival of Patients with Stage I Lung cancer Detected on CT Screening
  International Early Lung Cancer Action Program Investigators, NEJM, 1/1/2006
• The probability of lung cancer using both indicators of risk and CT findings
  C Henschke and I-ELCAP Investigators, RSNA, 1/1/2006
• Angiographic Embolization of a Traumatic Pulmonary Pseudoaneurysm
  Khan AA, Bauer TL, Garcia MJ, Panasuk DB, and Davies AL, Ann Thor Surgery, 1/1/2005
• CT Screening for Lung Cancer: Update 2005
  Henschke, Ph.D, MD on behalf of I-ELCAP Investigators, Surgical Oncology Clinics of North America, 1/1/2005
• Heparin-induced antibody formation and platelet activation in patients undergoing cardiopulmonary bypass surgery
  Bauer TL, Arepally G, Konkle BA, Mestichelli B, Shapiro SS, Clines DB, Poncz M, McNulty S, Amiral J, Hauk WW, Edie RN, Mannion JD, American Society of Hematology, 1/1/2004
• CT Screening for Lung Cancer: The relationship of disease stage to tumor size
  International Early Lung Cancer Action Program Investigators, Society of Thoracic Radiology, 1/1/2004
• Common Malignancies with Uncommon Sites of Presentation: Anterior Mediastinal Rhabdomyosarcoma
  Panasuk, DB, Bauer, TL, Davies AL, Schneider C, and Flynn C, J Clin.Oncology, 1/1/2003
• The incidence of anti-heparin antibodies in cardiopulmonary bypass using porcine and bovine heparin, a prospective study
  Konkle BA, Bauer TL, Arepally G, Clines DB, Poncz M, McNulty S, Edie RN, Mannion JD, Ann Thor Surg, 1/1/2001
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Lectures

• Thoracic Surgery Clinical Trials Update 
  1/1/2014
• Sub-lobar Resection is Equivalent to Lobectomy for Clinical Stage 1A Lung Cancer in Solid Nodules 
  1/1/2013
• Incidence of Cancer in Pulmonary Nodules Followed by a Thoracic Surgeon 
  1/1/2013
• Management of Pulmonary Carcinoids 
  1/1/2009
• Esophageal Cancer, Community Cancer Center Experience 
  1/1/2009
• Advanced Medical Imaging in Lung Cancer Management an Education 
  1/1/2009
• 3D Imaging in the Management of Lung Cancer and Surgical Education 
  1/1/2009
• Burden of Lung Cancer Screening the Surgical Perspective 
  1/1/2009
• Image Directed Therapy in the Management of Lung Cancer 
  1/1/2009
• A Computationally Efficient Scheme for Interactive Matting 
  1/1/2008
• GlaxoSmithKline Study VEG105290:  A Phase II Open-Label Multicenter Study to Evaluate the Safety and Efficacy of Pazopanib (GW786034) as Neoadjuvant Therapy in Treatme... 
  1/1/2008
• VATS Vagotomy in the Management of Marginal Ulcers following Bariatric Gastric Bypass Surgery 
  1/1/2008
• Curative gastrectomy for adenocarcinoma performed at a major community-based teaching hospital results in good outcomes 
  Orlando, FL - 1/1/2008
• Phase II Study of Pazopanib 9GW786034) Given Preoperatively in Stage I-II Non-Small Cell Lung Cancer (NSCLC): A Proof-of-Concept Study 
  Dresden, Germany - 1/1/2008
• Surgical Principles in Treating Early Stage Lung Cancer 
  1/1/2008
• Lung Cancer, Surgical Interventions to Improve the Quality of Life 
  1/1/2008
• Cancer Survivorship, Relay of Hope 
  1/8/2007
• A specific Guanosine-rich oligonucleotide, capable of forming stable quadraplex structures selectively blocks proliferation and induces apoptosis in esophageal tumor c... 
  Washington, DC - 1/1/2007
• Increasing the sensitivity of cancer cells to chemotherapeutic regimens by the introduction of single-stranded DNA oligonucleotides 
  San Diego, CA - 1/1/2006
• The Negative Predictive Value of Preoperative Combined CT and PET Scans on Diagnosing N2 Lymph Node Involvement in Lung Carcinoma 
  San Diego, CA - 1/1/2006
• Are smoking cessation classes beneficial or ineffective: within a lung cancer screening program? 
  New York, NY - 1/1/2005
• Medical Imaging 
  1/1/2005
• Controversies in the Management of Lung Cancer 
  1/25/2004
• Lung Cancer Screening 
  1/5/2004
• Size Predicts Improved Survival in Young Patients with Non-Small Cell Lung Cancer 
  1/1/2004
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