BingRenMD

PubMed

• Droplet Hi-C for Fast and Scalable Profiling of Chromatin Architecture in Single Cells.
  Lei Chang, Yang Xie, Brett Taylor, Zhaoning Wang, Jiachen Sun, Tuyet R Tan, Frank B Furnari, Ming Hu, Rafael Bejar, Clark C Chen, Bing Ren> ;Biorxiv. 2024 Apr 22
• RUNX1 C-terminal mutations impair blood cell differentiation by perturbing specific enhancer-promoter networks.
  Zhengyu Liang, Do-Hwan Lim, Cristina Diaz, Kei-Ichiro Arimoto, Lingbo Xia, Mengdan Liu, Xiang-Dong Fu, Dong-Er Zhang, Bing Ren, Nathan D Jayne, Poshen B Chen> ;Blood Advances. 2024 May 28
• 1 citations
  Spatially organized cellular communities form the developing human heart.
  Elie N Farah, Robert K Hu, Colin Kern, Qingquan Zhang, Ting-Yu Lu, Qixuan Ma, Shaina Tran, Bo Zhang, Daniel Carlin, Alexander Monell, Andrew P Blair, Zilu Wang, Jacque...> ;Nature. 2024 Mar 1
• First International Conference on Unconventional Animal Models of Alzheimer's Disease and Aging.
  Patricia Cogram, B Maximiliano Garduño, Bing Ren, Xiangmin Xu> ;Journal of Alzheimer's Disease. 2024 Jan 1
• 1 citations
  Role of H3K4 monomethylation in gene regulation.
  Zhaoning Wang, Bing Ren> ;Current Opinion in Genetics & Development. 2024 Feb 1
• Sensory Input, Sex, and Function Shape Hypothalamic Cell Type Development.
  Kaplan, H., Logeman, B., Zhang, K., Santiago, C., Sohail, N., Naumenko, S., Ho Sui, S., Ginty, D., Dulac, C., Ren, B.> ;Biorxiv. 2024 Jan 23
• Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex.
  Zemke, N., Armand, E., Wang, W., Lee, S., Zhou, J., Li, Y., Liu, H., Tian, W., Nery, J., Castanon, R., Bartlett, A., Osteen, J., Li, D., Zhuo, X., Xu, V., Chang, L., D...> ;Nature. 2024 Jan 1
• 3 citations
  A fast, scalable and versatile tool for analysis of single-cell omics data.
  Zhang, K., Zemke, N., Armand, E., Ren, B.> ;Nature Methods. 2024 Feb 1
• 3 citations
  Cell-type-specific 3D-genome organization and transcription regulation in the brain.
  Liu, S., Zheng, P., Wang, C., Jia, B., Zemke, N., Zhuang, X., Ren, B.> ;Biorxiv. 2023 Dec 5
• 3 citations
  Conserved and divergent gene regulatory programs of the mammalian neocortex.
  Nathan R Zemke, Ethan J Armand, Wenliang Wang, Seoyeon Lee, Jingtian Zhou, Yang Eric Li, Hanqing Liu, Wei Tian, Joseph R Nery, Rosa G Castanon, Anna Bartlett, Julia K ...> ;Nature. 2023 Dec 1
• 3 citations
  Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain.
  Hanqing Liu, Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube, Wei Tian, Mia Kenworthy, Jordan Altshul, Joseph R Nery, Huaming Chen, Rosa G Castan...> ;Nature. 2023 Dec 1
• 2 citations
  Single-cell analysis of chromatin accessibility in the adult mouse brain.
  Songpeng Zu, Yang Eric Li, Kangli Wang, Ethan J Armand, Sainath Mamde, Maria Luisa Amaral, Yuelai Wang, Andre Chu, Yang Xie, Michael Miller, Jie Xu, Zhaoning Wang, Kai...> ;Nature. 2023 Dec 1
• AP-1 signaling modulates cardiac fibroblast stress responses.
  Alexander J Whitehead, Hamza Atcha, James D Hocker, Bing Ren, Adam J Engler> ;Journal of Cell Science. 2023 Dec 1
• 10 citations
  Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells.
  Riccardo Calandrelli, Xingzhao Wen, John Lalith Charles Richard, Zhifei Luo, Tri C Nguyen, Chien-Ju Chen, Zhijie Qi, Shuanghong Xue, Weizhong Chen, Zhangming Yan, Weix...> ;Nature Communications. 2023 Oct 16
• 9 citations
  A comparative atlas of single-cell chromatin accessibility in the human brain.
  Yang Eric Li, Sebastian Preissl, Michael Miller, Nicholas D Johnson, Zihan Wang, Henry Jiao, Chenxu Zhu, Zhaoning Wang, Yang Xie, Olivier Poirion, Colin Kern, Antonio ...> ;Science. 2023 Oct 13
• 8 citations
  Droplet-based single-cell joint profiling of histone modifications and transcriptomes.
  Yang Xie, Chenxu Zhu, Zhaoning Wang, Melodi Tastemel, Lei Chang, Yang Eric Li, Bing Ren> ;Nature Structural & Molecular Biology. 2023 Oct 1
• 3 citations
  Robust enhancer-gene regulation identified by single-cell transcriptomes and epigenomes.
  Fangming Xie, Ethan J Armand, Zizhen Yao, Hanqing Liu, Anna Bartlett, M Margarita Behrens, Yang Eric Li, Jacinta D Lucero, Chongyuan Luo, Joseph R Nery, Antonio Pinto-...> ;Cell Genomics. 2023 Jul 12
• 11 citations
  Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project.
  Job Dekker, Frank Alber, Sarah Aufmkolk, Brian J Beliveau, Benoit G Bruneau, Andrew S Belmont, Lacramioara Bintu, Alistair Boettiger, Riccardo Calandrelli, Christine M...> ;Molecular Cell. 2023 Aug 3
• Pancreatic acinar metaplasia at the gastroesophageal junction is associated with protective effect against intestinal metaplasia in patients with gastroesophageal refl...
  Michael Andersen Jr, Bing Ren, Megan E Romano, Shannon N Schutz, Richard I Rothstein, Arief A Suriawinata, Xiaoying Liu, Mikhail Lisovsky> ;Human Pathology. 2023 Sep 1
• 6 citations
  A guide to the BRAIN Initiative Cell Census Network data ecosystem.
  Michael Hawrylycz, Maryann E Martone, Giorgio A Ascoli, Jan G Bjaalie, Hong-Wei Dong, Satrajit S Ghosh, Jesse Gillis, Ronna Hertzano, David R Haynor, Patrick R Hof, Yo...> ;Plos Biology. 2023 Jun 1
• 9 citations
  Interpreting non-coding disease-associated human variants using single-cell epigenomics.
  Kyle J Gaulton, Sebastian Preissl, Bing Ren> ;Nature Reviews. Genetics. 2023 Aug 1
• 8 citations
  Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain.
  Hanqing Liu, Qiurui Zeng, Jingtian Zhou, Anna Bartlett, Bang-An Wang, Peter Berube, Wei Tian, Mia Kenworthy, Jordan Altshul, Joseph R Nery, Huaming Chen, Rosa G Castan...> ;Biorxiv. 2023 Apr 18
• 4 citations
  KDM6A Loss Triggers an Epigenetic Switch That Disrupts Urothelial Differentiation and Drives Cell Proliferation in Bladder Cancer.
  Hong Qiu, Vladimir Makarov, Jennifer K Bolzenius, Angela Halstead, Yvonne Parker, Allen Wang, Gopakumar V Iyer, Hannah Wise, Daniel Kim, Varna Thayaparan, Daniel J Lin...> ;Cancer Research. 2023 Mar 15
• Author Correction: A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.
  Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu, Bing Ren> ;Nature Biotechnology. 2023 Jul 1
• 6 citations
  A spatial genome aligner for resolving chromatin architectures from multiplexed DNA FISH.
  Bojing Blair Jia, Adam Jussila, Colin Kern, Quan Zhu, Bing Ren> ;Nature Biotechnology. 2023 Jul 1
• Join now to see all

Journal Articles

• Coordinated Histone Modifications and Chromatin Reorganization in a Single Cell Revealed by FRET Biosensors  
  Bing Ren, MD, Proceedings of the National Academy of Sciences
• HUGIn: Hi-C Unifying Genomic Interrogator  
  Bing Ren, Yun Li, Bioinformatics