EfseviaVakianiMD

PubMed

• Deep Learning Model for Tumor Type Prediction using Targeted Clinical Genomic Sequencing Data.
  Madison Darmofal, Shalabh Suman, Gurnit Atwal, Michael Toomey, Jie-Fu Chen, Jason C Chang, Efsevia Vakiani, Anna M Varghese, Anoop Balakrishnan Rema, Aijazuddin Syed, ...> ;Cancer Discovery. 2024 Feb 27
• Tumour deposits are independently associated with recurrence in colon cancer.
  Lynn Hakki, Asama Khan, Eric Do, Mithat Gonen, Canan Firat, Efsevia Vakiani, Jinru Shia, Maria Widmar, Iris H Wei, J Joshua Smith, Emmanouil P Pappou, Garrett M Nash, ...> ;Colorectal Disease. 2024 Mar 1
• Deep Learning Model for Tumor Type Prediction using Targeted Clinical Genomic Sequencing Data.
  Madison Darmofal, Shalabh Suman, Gurnit Atwal, Jie-Fu Chen, Jason C Chang, Michael Toomey, Efsevia Vakiani, Anna M Varghese, Anoop Balakrishnan Rema, Aijazuddin Syed, ...> ;Medrxiv. 2023 Sep 10
• Recurrent TRAK1::RAF1 Fusions in pediatric low-grade gliomas.
  Jamal K Benhamida, Hannah J Harmsen, Deqin Ma, Christopher M William, Bryan K Li, Liliana Villafania, Purvil Sukhadia, Kerry A Mullaney, Michael C Dewan, Efsevia Vakia...> ;Brain Pathology. 2023 Sep 1
• The Impact of Germline Alterations in Appendiceal Adenocarcinoma.
  Michael B Foote, Henry Walch, Yelena Kemel, Efsevia Vakiani, Paul Johannet, Margaret Sheehan, Walid Chatila, Sebastian Chung, Garrett M Nash, Anna Maio, Jinru Shia, Di...> ;Clinical Cancer Research. 2023 Jul 14
• The impact of germline alterations in appendiceal adenocarcinoma.
  Michael B Foote, Henry Walch, Yelena Kemel, Efsevia Vakiani, Paul Johannet, Margaret Sheehan, Walid Chatila, Sebastian Chung, Garrett Nash, Anna Maio, Jinru Shia, Dian...> ;Clinical Cancer Research. 2023 May 18
• 2 citations
  Genomic Biomarkers Associated with Response to Induction Chemotherapy in Patients with Localized Pancreatic Ductal Adenocarcinoma.
  Brett L Ecker, Alice J Tao, Quisette P Janssen, Henry S Walch, Colin M Court, Vinod P Balachandran, Christopher H Crane, Michael I D'Angelica, Jeffrey A Drebin, T Pete...> ;Clinical Cancer Research. 2023 Apr 3
• 5 citations
  Integrated clinical and genomic analysis identifies driver events and molecular evolution of colitis-associated cancers.
  Walid K Chatila, Henry Walch, Jaclyn F Hechtman, Sydney M Moyer, Valeria Sgambati, David M Faleck, Amitabh Srivastava, Laura Tang, Jamal Benhamida, Dorina Ismailgeci, ...> ;Nature Communications. 2023 Jan 7
• 8 citations
  Molecular Classification of Appendiceal Adenocarcinoma.
  Michael B Foote, Henry Walch, Walid Chatila, Efsevia Vakiani, Chris Chandler, Felix Steinruecke, Garrett M Nash, Zsofia Stadler, Sebastian Chung, Rona Yaeger, Maria Ig...> ;Journal of Clinical Oncology. 2023 Mar 10
• 4 citations
  Comprehensive Molecular Characterization of Gallbladder Carcinoma and Potential Targets for Intervention.
  Nicolas A Giraldo, Esther Drill, Baby A Satravada, Imane El Dika, A Rose Brannon, Josephine Dermawan, Abhinita Mohanty, Kerem Ozcan, Debyani Chakravarty, Ryma Benayed,...> ;Clinical Cancer Research. 2022 Dec 15
• 31 citations
  Genomic and transcriptomic determinants of response to neoadjuvant therapy in rectal cancer.
  Walid K Chatila, Jin K Kim, Henry Walch, Michael R Marco, Chin-Tung Chen, Fan Wu, Dana M Omer, Danny N Khalil, Karuna Ganesh, Xuan Qu, Anisha Luthra, Seo-Hyun Choi, Yu...> ;Nature Medicine. 2022 Aug 1
• 21 citations
  Reprogrammed Schwann Cells Organize into Dynamic Tracks that Promote Pancreatic Cancer Invasion.
  Sylvie Deborde, Laxmi Gusain, Ann Powers, Andrea Marcadis, Yasong Yu, Chun-Hao Chen, Anna Frants, Elizabeth Kao, Laura H Tang, Efsevia Vakiani, Masataka Amisaki, Vinod...> ;Cancer Discovery. 2022 Oct 5
• 10 citations
  Detecting mismatch repair deficiency in solid neoplasms: immunohistochemistry, microsatellite instability, or both?
  Chiyun Wang, Liying Zhang, Efsevia Vakiani, Jinru Shia> ;Modern Pathology. 2022 Nov 1
• Primary Clonal Loss of Mismatch Repair Protein on Immunohistochemistry: A Pattern of Abnormality That Warrants Genetic Workup.
  Christine Orr, Chiyun Wang, Canan Firat, Louise C Connell, Margaret R Sheehan, Efsevia Vakiani, Zsofia K Stadler, Jinru Shia> ;JCO Precision Oncology. 2022 Jun 1
• 2 citations
  Survival After Induction Chemotherapy and Chemoradiation Versus Chemoradiation and Adjuvant Chemotherapy for Locally Advanced Rectal Cancer.
  Jin K Kim, Michael R Marco, Campbell S D Roxburgh, Chin-Tung Chen, Andrea Cercek, Paul Strombom, Larissa K F Temple, Garrett M Nash, Jose G Guillem, Philip B Paty, Ron...> ;The Oncologist. 2022 May 6
• 1 citations
  Pathological Evaluation of Rectal Cancer Specimens Using Micro-Computed Tomography.
  Masao Yoshida, Emine Cesmecioglu, Canan Firat, Hirotsugu Sakamoto, Alexei Teplov, Noboru Kawata, Peter Ntiamoah, Takashi Ohnishi, Kareem Ibrahim, Efsevia Vakiani, Juli...> ;Diagnostics. 2022 Apr 14
• 13 citations
  Biopsy and Margins Optimize Outcomes after Thermal Ablation of Colorectal Liver Metastases.
  Nikiforos Vasiniotis Kamarinos, Efsevia Vakiani, Mithat Gonen, Nancy E Kemeny, Carlie Sigel, Leonard B Saltz, Karen T Brown, Anne M Covey, Joseph P Erinjeri, Lynn A Br...> ;Cancers. 2022 Jan 29
• 4 citations
  Genomic Stratification of Resectable Colorectal Liver Metastasis Patients and Implications for Adjuvant Therapy and Survival.
  Brett L. Ecker, Paul Shin, Colin M Court, Vinod P. Balachandran, Rohit Chandwani, Jeffrey A. Drebin, William R. Jarnagin, T. Peter Kingham, Kevin C. Soares, Efsevia Va...> ;Annals of Surgery. 2021 Nov 18
• 5 citations
  Immuno-Fluorescent Assessment of Ablated Colorectal Liver Metastases: The Frozen Section of Image-Guided Tumor Ablation?
  Nikiforos Vasiniotis Kamarinos, Efsevia Vakiani, Sho Fujisawa, Mithat Gonen, Ning Fan, Yevgeniy Romin, Richard R K Do, Etay Ziv, Joseph P. Erinjeri, Elena N. Petre, Vl...> ;Journal of Vascular and Interventional Radiology. 2021 Nov 17
• 7 citations
  Genome-Derived Classification Signature for Ampullary Adenocarcinoma to Improve Clinical Cancer Care
  Saptarshi Chakraborty, Brett L. Ecker, Kenneth Seier, Victoria G. Aveson, Vinod P. Balachandran, Jeffrey A. Drebin, Michael I. D’Angelica, T. Peter Kingham, Carlie S. ...> ;Clinical Cancer Research. 2021 Nov 1
• 51 citations
  A Comprehensive Comparison of Early-Onset and Average-Onset Colorectal Cancers.
  Andrea Cercek, Walid K. Chatila, Rona Yaeger, Henry Walch, Gustavo Dos Santos Fernandes, Asha Krishnan, Lerie Palmaira, Anna Maio, Yelena Kemel, Preethi Srinivasan, Ch...> ;Journal of the National Cancer Institute. 2021 Aug 18
• 52 citations
  Enhanced specificity of clinical high-sensitivity tumor mutation profiling in cell-free DNA via paired normal sequencing using MSK-ACCESS.
  A. Rose Brannon, Gowtham Jayakumaran, Monica Diosdado, Juber Patel, Anna Razumova, Yu Hu, Fanli Meng, Mohammad Haque, Justyna Sadowska, Brian J. Murphy, Tessara Baldi,...> ;Nature Communications. 2021 Jun 18
• 64 citations
  Genetic Determinants of Outcome in Intrahepatic Cholangiocarcinoma
  Thomas Boerner, Esther Drill, Linda M. Pak, Bastien Nguyen, Carlie S. Sigel, Alexandre Doussot, Paul Shin, Debra A. Goldman, Mithat Gonen, Peter J. Allen, Vinod P. Bal...> ;Hepatology. 2021 Sep 1
• 5 citations
  Association of RAS Mutation Location and Oncologic Outcomes After Resection of Colorectal Liver Metastases.
  Thomas Boerner, Debra A. Goldman, Mithat Gonen, Timothy L. Frankel, Efsevia Vakiani, T. Peter Kingham, William R. Jarnagin, Alice C. Wei, Kevin C. Soares, David B. Sol...> ;Annals of Surgical Oncology. 2021 Feb 1
• 37 citations
  OncoTree: A Cancer Classification System for Precision Oncology.
  Ritika Kundra, Hongxin Zhang, Robert L. Sheridan, Sahussapont Joseph Sirintrapun, Avery Wang, Angelica Ochoa, Manda Wilson, Benjamin Gross, Yichao Sun, Ramyasree Madup...> ;JCO Clinical Cancer Informatics. 2021 Feb 1
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Journal Articles

• Logarithmic Expansion of LGR5+ Cells in Human Colorectal Cancer  
  Efsevia Vakiani, Philip B Paty, Richard Kolesnick, Zvi Fuks, ScienceDirect