JamalBenhamidaMD

PubMed

• Cell-free DNA from nail clippings as source of normal control for genomic studies in hematologic malignancies.
  Krystel-Whittemore, M., Petrova-Drus, K., Ptashkin, R., Ewalt, M., Yao, J., Liu, Y., Zhu, M., Benhamida, J., Durham, B., Kumar, J., Nafa, K., Kiecka, I., Bowman, A., G...> ;Haematologica. 2024 Mar 7
• Liquid biopsy-based circulating tumour (ct)DNA analysis of a spectrum of myeloid and lymphoid malignancies yields clinically actionable results.
  Douglas A Mata, Jessica K Lee, Vignesh Shanmugam, Chelsea B Marcus, Alexa B Schrock, Erik A Williams, Lauren L Ritterhouse, Richard A Hickman, Tyler Janovitz, Nimesh R...> ;Histopathology. 2024 Feb 29
• DNA Methylation Profiling Enables Accurate Classification of Nonductal Primary Pancreatic Neoplasms.
  Anna Vera D Verschuur, Wenzel M Hackeng, Florine Westerbeke, Jamal K Benhamida, Olca Basturk, Pier Selenica, G Mihaela Raicu, I Quintus Molenaar, Hjalmar C van Santvoo...> ;Clinical Gastroenterology and Hepatology. 2024 Feb 20
• Quantification of Measurable Residual Disease Detection by Next-Generation Sequencing-Based Clonality Testing in B-Cell and Plasma Cell Neoplasms.
  Ying Liu, Caleb Ho, Wayne Yu, Ying Huang, Jeffrey Miller, Qi Gao, Mustafa Syed, Yuanyuan Ma, Meiyi Wang, Lidia Maciag, Kseniya Petrova-Drus, Menglei Zhu, JinJuan Yao, ...> ;The Journal of Molecular Diagnostics. 2024 Mar 1
• Enhanced clinical assessment of hematologic malignancies through routine paired tumor and normal sequencing.
  Ryan N Ptashkin, Mark D Ewalt, Gowtham Jayakumaran, Iwona Kiecka, Anita S Bowman, JinJuan Yao, Jacklyn Casanova, Yun-Te David Lin, Kseniya Petrova-Drus, Abhinita S Moh...> ;Nature Communications. 2023 Oct 28
• Impact of Rare and Multiple Concurrent Gene Fusions on Diagnostic DNA Methylation Classifier in Brain Tumors.
  Kristyn Galbraith, Jonathan Serrano, Guomiao Shen, Ivy Tran, Cheyanne C Slocum, Courtney Ketchum, Zied Abdullaev, Rust Turakulov, Tejus Bale, Marc Ladanyi, Purvil Sukh...> ;Molecular Cancer Research. 2024 Jan 2
• 1 citations
  Microsatellite Instability and Mismatch Repair Deficiency Define a Distinct Subset of Lung Cancers Characterized by Smoking Exposure, High Tumor Mutational Burden, and...
  Soo-Ryum Yang, Erika Gedvilaite, Ryan Ptashkin, Jason Chang, John Ziegler, Douglas A Mata, Liliana B Villafania, Khedoudja Nafa, Jaclyn F Hechtman, Ryma Benayed, Ahmet...> ;Journal of Thoracic Oncology. 2024 Mar 1
• Recurrent TRAK1::RAF1 Fusions in pediatric low-grade gliomas.
  Jamal K Benhamida, Hannah J Harmsen, Deqin Ma, Christopher M William, Bryan K Li, Liliana Villafania, Purvil Sukhadia, Kerry A Mullaney, Michael C Dewan, Efsevia Vakia...> ;Brain Pathology. 2023 Sep 1
• Clonal Characterization and Somatic Hypermutation Assessment by Next-Generation Sequencing in Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma: A Detailed Descr...
  Kseniya Petrova-Drus, Mustafa Syed, Wayne Yu, Kasey Hutt, Alyssa M Zlotnicki, Ying Huang, Monika Kamalska-Cyganik, Lidia Maciag, Meiyi Wang, Yuanyuan G Ma, Caleb Ho, C...> ;The Journal of Molecular Diagnostics. 2023 Jun 1
• 3 citations
  Distinct IDH1/2-associated Methylation Profile and Enrichment ofandMutations Distinguish Dedifferentiated Chondrosarcoma from Conventional Chondrosarcoma.
  Josephine Kam Tai Dermawan, Khedoujia Nafa, Abhinita Mohanty, Yingjuan Xu, Ivelise Rijo, Jacklyn Casanova, Liliana Villafania, Jamal Benhamida, Ciara M Kelly, William ...> ;Cancer Research Communications. 2023 Mar 1
• Outcomes of intraventricular 131-I-omburtamab and external beam radiotherapy in patients with recurrent medulloblastoma and ependymoma.
  Kathryn R Tringale, Suzanne L Wolden, Matthias Karajannis, Sofia Haque, Luca Pasquini, Onur Yildirim, Marc Rosenblum, Jamal K Benhamida, Nai-Kong Cheung, Mark Souweida...> ;Journal of Neuro-Oncology. 2023 Mar 1
• 5 citations
  Integrated clinical and genomic analysis identifies driver events and molecular evolution of colitis-associated cancers.
  Walid K Chatila, Henry Walch, Jaclyn F Hechtman, Sydney M Moyer, Valeria Sgambati, David M Faleck, Amitabh Srivastava, Laura Tang, Jamal Benhamida, Dorina Ismailgeci, ...> ;Nature Communications. 2023 Jan 7
• 4 citations
  Methylation Analyses Reveal Promoter Hypermethylation as a Rare Cause of "Second Hit" in Germline BRCA1-Associated Pancreatic Ductal Adenocarcinoma.
  Binbin Zheng-Lin, Michael Rainone, Anna M Varghese, Kenneth H Yu, Wungki Park, Michael Berger, Miika Mehine, Joanne Chou, Marinela Capanu, Diana Mandelker, Zsofia K St...> ;Molecular Diagnosis & Therapy. 2022 Nov 1
• 7 citations
  Next-generation sequencing of cerebrospinal fluid for clinical molecular diagnostics in pediatric, adolescent and young adult brain tumor patients.
  Alexandra M Miller, Luca Szalontay, Nancy Bouvier, Katherine Hill, Hamza Ahmad, Johnathan Rafailov, Alex J Lee, M Irene Rodriguez-Sanchez, Onur Yildirim, Arti Patel, T...> ;Neuro-Oncology. 2022 Oct 3
• 1 citations
  YAP1-MAML2 fusion in a pediatric NF2-wildtype intraparenchymal brainstem schwannoma.
  Matthias A Karajannis, Bryan K Li, Mark M Souweidane, Benjamin Liechty, JinJuan Yao, Jamal K Benhamida, Tejus A Bale, Marc K Rosenblum> ;Acta Neuropathologica Communications. 2022 Aug 19
• 11 citations
  Comprehensive genomic profiling of EWSR1/FUS::CREB translocation-associated tumors uncovers prognostically significant recurrent genetic alterations and methylation-tr...
  Josephine K Dermawan, Fabio Vanoli, Laurie Herviou, Yun-Shao Sung, Lei Zhang, Samuel Singer, William D Tap, Ryma Benayed, Tejus A Bale, Jamal K Benhamida, Brendan C Di...> ;Modern Pathology. 2022 Aug 1
• Pancreatoblastomas and mixed and pure acinar cell carcinomas share epigenetic signatures distinct from other neoplasms of the pancreas.
  Jamal K Benhamida, Monika Vyas, Atsushi Tanaka, Lu Wang, Armita Bahrami, Kerem Ozcan, Olca Basturk, Liliana Villafania, Douglas A Mata, Tony El Jabbour, Pier Selenica,...> ;Modern Pathology. 2022 Jul 1
• 8 citations
  EWSR1::YY1 fusion positive peritoneal epithelioid mesothelioma harbors mesothelioma epigenetic signature: Report of 3 cases in support of an emerging entity.
  Josephine K Dermawan, Dianne Torrence, Cheng-Han Lee, Liliana Villafania, Kerry A Mullaney, Sara DiNapoli, Purvil Sukhadia, Ryma Benayed, Laetitia Borsu, Narasimhan P ...> ;Genes, Chromosomes & Cancer. 2022 Oct 1
• 5 citations
  Multi-institutional study of the frequency, genomic landscape, and outcome of IDH-mutant glioma in pediatrics.
  Kee Kiat Yeo, Sanda Alexandrescu, Jennifer A Cotter, Jayne Vogelzang, Varun Bhave, Marilyn M Li, Jianling Ji, Jamal K Benhamida, Marc K Rosenblum, Tejus A Bale, Nancy ...> ;Neuro-Oncology. 2023 Jan 5
• 23 citations
  Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers.
  N Shukla, M F Levine, G Gundem, D Domenico, B Spitzer, N Bouvier, J E Arango-Ossa, D Glodzik, J S Medina-Martínez, U Bhanot, J Gutiérrez-Abril, Y Zhou, E Fiala, E Stoc...> ;Nature Communications. 2022 May 18
• 11 citations
  DNA methylation analysis of glioblastomas harboring FGFR3-TACC3 fusions identifies a methylation subclass with better patient survival.
  Zhichao Wu, Osorio Lopes Abath Neto, Tejus A Bale, Jamal Benhamida, Douglas Mata, Rust Turakulov, Zied Abdullaev, Daniel Marker, Courtney Ketchum, Hye-Jung Chung, Cate...> ;Acta Neuropathologica. 2022 Jul 1
• 14 citations
  Upfront molecular targeted therapy for the treatment of BRAF-mutant pediatric high-grade glioma.
  Tom Rosenberg, Kee Kiat Yeo, Audrey Mauguen, Sanda Alexandrescu, Sanjay P Prabhu, Jessica W Tsai, Seth Malinowski, Mrinal Joshirao, Karishma Parikh, Sameer Farouk Sait...> ;Neuro-Oncology. 2022 Nov 2
• 9 citations
  Understanding the impact of chemotherapy on the immune landscape of high-grade serous ovarian cancer.
  Rami Vanguri, Jamal Benhamida, Jonathan H Young, Yanyun Li, Oliver Zivanovic, Dennis Chi, Alexandra Snyder, Travis J Hollmann, Lavigne, K. A., Katherine L Mager> ;Gynecologic Oncology Reports. 2022 Feb 1
• 1 citations
  Quantitative Off-Target Detection of Epstein-Barr Virus-Derived DNA in Routine Molecular Profiling of Hematopoietic Neoplasms by Panel-Based Hybrid-Capture Next-Genera...
  Kseniya Petrova-Drus, Andrés E. Quesada, Anita S. Bowman, Ryan Ptashkin, Jinjuan Yao, Maria E. Arcila, Caleb Ho, Christine Moung, Jennifer Regalado, Ryma Benayed, Jama...> ;The Journal of Molecular Diagnostics. 2021 Nov 18
• 13 citations
  Intimal sarcomas and undifferentiated cardiac sarcomas carry mutually exclusive MDM2, MDM4, and CDK6 amplifications and share a common DNA methylation signature.
  Christian Koelsche, Jamal Benhamida, Felix K. F. Kommoss, Damian Stichel, David T.W. Jones, Stefan M. Pfister, Christoph E. Heilig, Stefan Fröhling, Albrecht Stenzinge...> ;Modern Pathology. 2021 Jul 26
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Abstracts/Posters

• Plasma Cell Myeloma Residual Disease Quantitation Using a Next-Generation Sequencing-Based IGH Clonal Rearrangement Assay with the Aid of a Spike-in Clonal Sequence
  Jamal Benhamida, 61st Annual American Society of Hematology Meeting, Orlando, FL, 12/8/2019