JeffreyChengMD

PubMed

• Short cell cycle duration is a phenotype of human epidermal stem cells.
  Tong Xiao, Ugomma C Eze, Alex Charruyer-Reinwald, Tracy Weisenberger, Ayman Khalifa, Brook Abegaze, Gabrielle K Schwab, Rasha H Elsabagh, T Richard Parenteau, Karl Koc...> ;Stem Cell Research & Therapy. 2024 Mar 13
• A single-cell atlas of IL-23 inhibition in cutaneous psoriasis distinguishes clinical response.
  Wu, D., Hailer, A., Wang, S., Yuan, M., Chan, J., El Kurdi, A., Han, D., Ali, H., D'Angio, B., Mayer, A., Rahim, M., Kondo, A., Klufas, D., Kim, E., Shain, A., Choi, J...> ;Science Immunology. 2024 Jan 26
• STmut: a framework for visualizing somatic alterations in spatial transcriptomics data of cancer.
  Limin Chen, Darwin Chang, Bishal Tandukar, Delahny Deivendran, Joanna Pozniak, Noel Cruz-Pacheco, Raymond J Cho, Jeffrey Cheng, Iwei Yeh, Chris Marine, Boris C Bastian...> ;Genome Biology. 2023 Nov 30
• 1 citations
  GLUT3 promotes macrophage signaling and function via RAS-mediated endocytosis in atopic dermatitis and wound healing.
  Dong-Min Yu, Eunice E Lee, Dohun Kim, Ruchika Mahapatra, Elysha K Rose, Zhiwei Zhou, Calvin Hosler, Abdullah El Kurdi, Jun-Yong Choe, E Dale Abel, Gerta Hoxhaj, Kennet...> ;The Journal of Clinical Investigation. 2023 Nov 1
• Optimizing Single T-Cell Transcriptomic Discrimination of Atopic Dermatitis Versus Psoriasis Vulgaris.
  Mark A Taylor, Abdullah El Kurdi, Ashley Hailer, Sijia Wang, Michelle Yuan, Sumanta Mukhopadhyay, Tina Bhutani, Jeffrey P North, Raymond J Cho, Jeffrey B Cheng> ;The Journal of Investigative Dermatology. 2024 Apr 1
• 2 citations
  Isolation of human cutaneous immune cells for single-cell RNA sequencing.
  Ashley A Hailer, David Wu, Abdullah El Kurdi, Michelle Yuan, Raymond J Cho, Jeffrey B Cheng> ;STAR Protocols. 2023 Apr 28
• 1 citations
  Transcriptomics aids differentiation of IL-23 overactivity in a patient with atypical skin and joint disease.
  Marwa Hakimi, Jeffrey P North, Mark A Taylor, Ashley Hailer, Yale Liu, Esther Kim, Kerstin Morehead, Kanade Shinkai, Tina Bhutani, Jeffrey B Cheng, Raymond J Cho> ;Lancet. 2023 Apr 22
• 1 citations
  A Novel Potential Role for Monocytes Revealed by Single Cell Analysis of Immunotherapy Induced Immune Related Adverse Events.
  Zachary Garrison, Matthew Chang, Noah Hornick, Wesley Y Yu, Jeffrey B Cheng, Rajan P Kulkarni> ;Cancers. 2022 Nov 2
• 2 citations
  Circulating biomarkers of response to immunotherapy and immune-related adverse events.
  Zachary Garrison, Noah Hornick, Jeffrey Cheng, Rajan P Kulkarni> ;Expert Review of Molecular Diagnostics. 2022 Sep 1
• 5 citations
  A single-cell transcriptional gradient in human cutaneous memory T cells restricts Th17/Tc17 identity.
  Christopher P Cook, Mark Taylor, Yale Liu, Ralf Schmidt, Andrew Sedgewick, Esther Kim, Ashley Hailer, Jeffrey P North, Paymann Harirchian, Hao Wang, Sakeen W Kashem, Y...> ;Cell Reports. Medicine. 2022 Aug 16
• 2 citations
  Spectral clustering of single-cell multi-omics data on multilayer graphs.
  Shuyi Zhang, Jacob R Leistico, Raymond J Cho, Jeffrey B Cheng, Jun S Song> ;Bioinformatics. 2022 Jul 11
• 43 citations
  Classification of human chronic inflammatory skin disease based on single-cell immune profiling.
  Yale Liu, Hao Wang, Mark Taylor, Christopher Cook, Alejandra Martínez-Berdeja, Jeffrey P North, Paymann Harirchian, Ashley A Hailer, Zijun Zhao, Ruby Ghadially, Robert...> ;Science Immunology. 2022 Apr 15
• 6 citations
  Defining Patient-Level Molecular Heterogeneity in Psoriasis Vulgaris Based on Single-Cell Transcriptomics.
  Yale Liu, Hao Wang, Christopher Cook, Mark A Taylor, Jeffrey P North, Ashley Hailer, Yanhong Shou, Arsil Sadik, Esther Kim, Elizabeth Purdom, Jeffrey B Cheng, Raymond ...> ;Frontiers in Immunology. 2022 Jan 1
• 22 citations
  Single-Cell Profiling Reveals Divergent, Globally Patterned Immune Responses in Murine Skin Inflammation
  Yale Liu, Christopher Cook, Andrew J. Sedgewick, Shuyi Zhang, Marlys S. Fassett, Roberto R. Ricardo-Gonzalez, Paymann Harirchian, Sakeen W. Kashem, Sho Hanakawa, Jacob...> ;Iscience. 2020 Oct 23
• 1 citations
  Riemannian geometry and statistical modeling correct for batch effects and control false discoveries in single-cell surface protein count data.
  Shuyi Zhang, Jacob R. Leistico, Christopher Cook, Yale Liu, Raymond J. Cho, Jeffrey B. Cheng, Jun S. Song> ;Physical Review. E. 2020 Jul 1
• 39 citations
  Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators.
  Alex I Finnegan, Raymond J. Cho, Alan Luu, Paymann Harirchian, Jerry Lee, Jeffrey B. Cheng, Jun S. Song> ;Frontiers in Genetics. 2019 Sep 3
• 11 citations
  Local genomic features predict the distinct and overlapping binding patterns of the bHLH-Zip family oncoproteins MITF and MYC-MAX.
  Miroslav Hejna, Wooyoung M. Moon, Jeffrey B. Cheng, Akinori Kawakami, David E. Fisher, Jun S. Song> ;Pigment Cell & Melanoma Research. 2019 Jul 1
• 16 citations
  A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes.
  Paymann Harirchian, Jerry Lee, Stephanie Hilz, Andrew J. Sedgewick, Bethany E. Perez White, Michael J. Kesling, Thaddeus W. Mully, Justin Golovato, Matthew D. Gray, Th...> ;The Journal of Investigative Dermatology. 2019 Jun 1
• 165 citations
  Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.
  Jeffrey B. Cheng, Andrew J. Sedgewick, Alex I Finnegan, Paymann Harirchian, Jerry Lee, Sunjong Kwon, Marlys S. Fassett, Justin Golovato, Matthew D. Gray, Ruby Ghadiall...> ;Cell Reports. 2018 Oct 23
• Emergence and Evolution of Mutational Hotspots in Sun-Damaged Skin.
  Jeffrey B. Cheng, Raymond J. Cho> ;The Journal of Investigative Dermatology. 2018 Jan 1
• 9 citations
  Induced Pluripotent Stem Cell Differentiation and Three-Dimensional Tissue Formation Attenuate Clonal Epigenetic Differences in Trichohyalin
  Anastasia Petrova, Antonio Capalbo, Laureen Jacquet, Simon Hazelwood-Smith, Dimitra Dafou, Carl Hobbs, Matthew Arno, Alessio Farcomeni, Liani Devito, Heba Badraiq, Mic...> ;Stem Cells and Development. 2016 Sep 1
• 50 citations
  Epigenetic and transcriptional determinants of the human breast
  Philippe Gascard, Misha Bilenky, Mahvash Sigaroudinia, Jianxin Zhao, Luolan Li, Annaick Carles, Allen Delaney, Angela Tam, Baljit Kamoh, Stephanie Cho, Malachi Griffit...> ;Nature Communications. 2015 Feb 18
• 20 citations
  Regulatory network decoded from epigenomes of surface ectoderm-derived cell types
  Rebecca F. Lowdon, Bo Zhang, Misha Bilenky, T. Mauro, Daofeng Li, Philippe Gascard, Mahvash Sigaroudinia, Peggy J. Farnham, Boris C. Bastian, Thea D. Tlsty, Marco A. M...> ;Nature Communications. 2014 Nov 25
• 82 citations
  Transcription Restores DNA Repair to Heterochromatin, Determining Regional Mutation Rates in Cancer Genomes
  Christina Zheng, Nicholas J. Wang, Jongsuk Chung, Homayoun Moslehi, J. Zachary Sanborn, Joseph S. Hur, Eric A. Collisson, Swapna S. Vemula, Agne Naujokas, Kami E. Chio...> ;Cell Reports. 2014 Nov 20
• 14 citations
  ALEA: a toolbox for allele-specific epigenomics analysis.
  Hamid Younesy, Torsten Möller, Alireza Heravi-Moussavi, Jeffrey B. Cheng, Joseph F. Costello, Matthew C. Lorincz, Mohammad M. Karimi, Steven J.M. Jones> ;Bioinformatics. 2014 Apr 15
• Join now to see all