JieZhangMDPhD

PubMed

• 19 citations
  Artificial intelligence reveals features associated with breast cancer neoadjuvant chemotherapy responses from multi-stain histopathologic images.
  Zhi Huang, Wei Shao, Zhi Han, Ahmad Mahmoud Alkashash, Carlo De la Sancha, Anil V Parwani, Hiroaki Nitta, Yanjun Hou, Tongxin Wang, Paul Salama, Maher Rizkalla, Jie Zh...> ;NPJ Precision Oncology. 2023 Jan 27
• 15 citations
  Bassoon contributes to tau-seed propagation and neurotoxicity.
  Pablo Martinez, Henika Patel, Yanwen You, Nur Jury, Abigail Perkins, Audrey Lee-Gosselin, Xavier Taylor, Yingjian You, Gonzalo Viana Di Prisco, Xiaoqing Huang, Sayan D...> ;Nature Neuroscience. 2022 Dec 1
• 2 citations
  SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression.
  Yusong Liu, Tongxin Wang, Ben Duggan, Michael Sharpnack, Kun Huang, Jie Zhang, Xiufen Ye, Travis S Johnson> ;Briefings in Bioinformatics. 2022 May 13
• 18 citations
  Activated endothelial cells induce a distinct type of astrocytic reactivity.
  Xavier Taylor, Pablo Cisternas, Nur Jury, Pablo Martinez, Xiaoqing Huang, Yanwen You, Javier Redding-Ochoa, Ruben Vidal, Jie Zhang, Juan Troncoso, Cristian A Lasagna-R...> ;Communications Biology. 2022 Mar 29
• 5 citations
  Diagnostic Evidence GAuge of Single cells (DEGAS): a flexible deep transfer learning framework for prioritizing cells in relation to disease.
  Travis S Johnson, Christina Y Yu, Zhi Huang, Siwen Xu, Tongxin Wang, Chuanpeng Dong, Wei Shao, Mohammad Abu Zaid, Xiaoqing Huang, Yijie Wang, Christopher Bartlett, Yan...> ;Genome Medicine. 2022 Feb 1
• Optimal transport- and kernel-based early detection of mild cognitive impairment patients based on magnetic resonance and positron emission tomography images.
  Ziyu Liu, Travis S Johnson, Wei Shao, Min Zhang, Jie Zhang, Kun Huang> ;Alzheimer's Research & Therapy. 2022 Jan 7
• 1 citations
  Predicting melanoma survival and metastasis with interpretable histopathological features and machine learning models.
  Justin Couetil, Ziyu Liu, Kun Huang, Jie Zhang, Ahmed K Alomari> ;Frontiers in Medicine. 2022 Jan 1
• 107 citations
  MOGONET integrates multi-omics data using graph convolutional networks allowing patient classification and biomarker identification
  Tongxin Wang, Wei Shao, Zhi Huang, Haixu Tang, Jie Zhang, Zhengming Ding, Kun Huang> ;Nature Communications. 2021 Jun 8
• 5 citations
  Combinatorial analyses reveal cellular composition changes have different impacts on transcriptomic changes of cell type specific genes in Alzheimer's Disease.
  Travis S. Johnson, Shunian Xiang, Tianhan Dong, Zhi Huang, Michael Cheng, Tianfu Wang, Kai Yang, Dong Ni, Kun Huang, Jie Zhang> ;Scientific Reports. 2021 Jan 11
• 8 citations
  Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing.
  Travis S. Johnson, Shunian Xiang, Bryan R. Helm, Zachary B. Abrams, Peter Neidecker, Raghu Machiraju, Yan Zhang, Kun Huang, Jie Zhang> ;Scientific Reports. 2020 Oct 22
• Generalized gene co-expression analysis via subspace clustering using low-rank representation.
  Wang, T.,Zhang, J.,Huang, K.> ;BMC Bioinformatics. 2019 May 11
• Activation of 20-HETE/PPARs involved in reno-therapeutic effect of naringenin on diabetic nephropathy.
  Ding, S.,Qiu, H.,Huang, J.,Chen, R.,Zhang, J.,Huang, B.,Zou, X.,Cheng, O.,Jiang, Q.> ;Chem. Biol. Interact.. 2019 May 08
• A seleno-hormetine protects bone marrow hematopoietic cells against ionizing radiation-induced toxicities.
  Bartolini, D.,Wang, Y.,Zhang, J.,Giustarini, D.,Rossi, R.,Wang, G. Y.,Torquato, P.,Townsend, D. M.,Tew, K. D.,Galli, F.> ;PLoS ONE. 2019 Apr 30
• 9 citations
  Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data
  Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang> ;Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing. 2018 Nov 1
• Prosurvival roles mediated by the PERK signaling pathway effectively prevent excessive endoplasmic reticulum stress-induced skeletal muscle loss during high-stress con...
  Zhang, J.,Wei, Y.,Qu, T.,Wang, Z.,Xu, S.,Peng, X.,Yan, X.,Chang, H.,Wang, H.,Gao, Y.> ;J. Cell. Physiol.. 2019 Apr 04
• SALMON: Survival Analysis Learning With Multi-Omics Neural Networks on Breast Cancer.
  Huang, Z.,Zhan, X.,Xiang, S.,Johnson, T. S.,Helm, B.,Yu, C. Y.,Zhang, J.,Salama, P.,Rizkalla, M.,Han, Z.,Huang, K.> ;Front Genet. 2019 Mar 25
• Brain annotation toolbox: exploring the functional and genetic associations of neuroimaging results.
  Liu, Z.,Rolls, E. T.,Liu, Z.,Zhang, K.,Yang, M.,Du, J.,Gong, W.,Cheng, W.,Dai, F.,Wang, H.,Ugurbil, K.,Zhang, J.,Feng, J.> ;Bioinformatics. 2019 Mar 12
• Profibrotic effect of IL-17A and elevated IL-17RA in idiopathic pulmonary fibrosis and rheumatoid arthritis-associated lung disease support a direct role for IL-17A/IL...
  Zhang, J.,Wang, D.,Wang, L.,Wang, S.,Roden, A. C.,Zhao, H.,Li, X.,Prakash, Y. S.,Matteson, E. L.,Tschumperlin, D. J.,Vassallo, R.> ;Am. J. Physiol. Lung Cell Mol. Physiol.. 2019 Jan 04
• Pharmacological Targeting of STK19 Inhibits Oncogenic NRAS-Driven Melanomagenesis.
  Yin, C.,Zhu, B.,Zhang, T.,Liu, T.,Chen, S.,Liu, Y.,Li, X.,Miao, X.,Li, S.,Mi, X.,Zhang, J.,Li, L.,Wei, G.,Xu, Z. X.,Gao, X.,Huang, C.,Wei, Z.,Goding, C. R.,Wang, P.,De...> ;Cell. 2019 Feb 05
• EETs/PPARs activation together mediates the preventive effect of naringenin in high glucose-induced cardiomyocyte hypertrophy.
  Zhang, J.,Qiu, H.,Huang, J.,Ding, S.,Huang, B.,Zhou, P.,Jiang, Q.> ;Biomed. Pharmacother.. 2018 Dec 16
• Protaetia brevitarsis larvae can efficiently convert herbaceous and ligneous plant residues to humic acids.
  Li, Y.,Fu, T.,Geng, L.,Shi, Y.,Chu, H.,Liu, F.,Liu, C.,Song, F.,Zhang, J.,Shu, C.> ;Waste Manag. 2018 Dec 06
• Condition-specific gene co-expression network mining identifies key pathways and regulators in the brain tissue of Alzheimer's disease patients.
  Xiang, S.,Huang, Z.,Wang, T.,Han, Z.,Yu, C. Y.,Ni, D.,Huang, K.,Zhang, J.> ;BMC Med Genomics. 2019 Jan 02
• Genome-wide CRISPR screens reveal synthetic lethality of RNASEH2 deficiency and ATR inhibition.
  Wang, C.,Wang, G.,Feng, X.,Shepherd, P.,Zhang, J.,Tang, M.,Chen, Z.,Srivastava, M.,McLaughlin, M. E.,Navone, N. M.,Hart, G. T.,Chen, J.> ;Oncogene. 2018 Dec 12
• Engineering hydrogenated manganese dioxide nanostructures for high-performance supercapacitors.
  Liu, X. Y.,Gong, T. C.,Zhang, J.,Ji, J.,Huo, W. C.,Cao, T.,Zhang, Y. X.,Zhang, X.,Liu, Y.> ;J Colloid Interface Sci. 2018 Nov 27
• Spontaneous recovery of conditioned eyeblink responses is associated with transiently decreased cerebellar theta activity in guinea pigs.
  Wang, H.,Sun, M. J.,Chen, H.,Zhang, J.,Zhang, L. B.,Zhang, W. W.,Xiong, Y.,Bo, H.> ;Behav. Brain Res.. 2018 Nov 24
• Join now to see all