MarkMusenMDPhD

Internal Medicine • Stanford, CA

Research in biomedical informatics at Stanford University School of Medicine

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Office
Medical School Office Building, Suite 215
1625 Welch Road
Stanford, CA 94305
Phone+1 650-723-6979
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Education & Training

Stanford Health Care-Sponsored Stanford UniversityResidency, Internal Medicine, 1980 - 1983
The Warren Alpert Medical School of Brown UniversityClass of 1980

Certifications & Licensure

CA State Medical License 1981 - 2019
American Board of Internal Medicine Internal Medicine

Awards, Honors, & Recognition

Elected Member The American Society for Clinical Investigation, 1997

Publications & Presentations

PubMed

3 citations
Using ethnographic methods to classify the human experience in medicine: a case study of the presence ontology.
Amrapali Maitra, Maulik R. Kamdar, Donna M. Zulman, Marie C. Haverfield, Cati Brown-Johnson, Rachel Schwartz, Sonoo Thadaney Israni, Abraham Verghese, Mark A. Musen> ;Journal of the American Medical Informatics Association. 2021 Aug 13
7 citations
Design of a FAIR digital data health infrastructure in Africa for COVID-19 reporting and research
Mirjam van Reisen, Francisca Oladipo, Mia Stokmans, Mouhamed Mpezamihgo, Sakinat Oluwabukonla Folorunso, Erik Anthony Schultes, Mariam Basajja, Aliya Aktau, Samson Yoh...> ;Advanced Genetics. 2021 Jun 1
5 citations
An empirical meta-analysis of the life sciences linked open data on the web
Maulik R. Kamdar, Mark A. Musen> ;Scientific Data. 2021 Jan 21
19 citations
Obstacles to the reuse of study metadata in ClinicalTrials.gov
Laura Miron, Rafael S. Gonçalves, Mark A. Musen> ;Scientific Data. 2020 Dec 18
9 citations
OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases.
Andre Kumar, Rachael C. Aikens, Jason Hom, Lisa Shieh, Jonathan Chiang, David Morales, DP Saini, Mark A. Musen, Michael Baiocchi, Russ B. Altman, Mary K. Goldstein, St...> ;Journal of the American Medical Informatics Association. 2020 Dec 9
5 citations
Toward a Harmonized WHO Family of International Classifications Content Model.
Samson W. Tu, Csongor Nyulas, Tania Tudorache, Mark A. Musen, Andrea Martinuzzi, Coen H. van Gool, Vincenzo Della Mea, Christopher G. Chute, Lucilla Frattura, Nicholas...> ;Studies in Health Technology and Informatics. 2020 Jun 16
5 citations
Physician Usage and Acceptance of a Machine Learning Recommender System for Simulated Clinical Order Entry.
Jonathan Chiang, Andre Kumar, David Morales, DP Saini, Jason Hom, Lisa Shieh, Mark A. Musen, Mary K. Goldstein, Jonathan H. Chen> ;AMIA Joint Summits on Translational Science Proceedings. AMIA Joint Summits on Translational Science. 2020 May 30
12 citations
Enabling Web-scale data integration in biomedicine through Linked Open Data.
Maulik R. Kamdar, Javier D. Fernández, Axel Polleres, Tania Tudorache, Mark A. Musen> ;NPJ Digital Medicine. 2019 Sep 10
The variable quality of metadata about biological samples used in biomedical experiments.
Gonçalves, R. S.,Musen, M. A.> ;Sci Data. 2019 Feb 20
6 citations
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases.
Marcos Martínez-Romero, Martin J O'Connor, Attila L Egyedi, Debra Willrett, Josef Hardi, John Graybeal, Mark A Musen> ;Database. 2019 Jan 1
5 citations
Unleashing the value of Common Data Elements through the CEDAR Workbench.
Martin J. O'Connor, Denise Warzel, Marcos Martínez-Romero, Josef Hardi, Debra Willrett, Attila L. Egyedi, Aras Eftekhari, John Graybeal, Mark A. Musen> ;AMIA ... Annual Symposium Proceedings. AMIA Symposium. 2019 Jan 1
7 citations
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Reposito...
Syed Ahmad Chan Bukhari, Martin J. O'Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Florian Rubelt, Kei-Hoi Cheung, St...> ;Frontiers in Immunology. 2018 Aug 16
13 citations
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein> ;BMC Bioinformatics. 2018 Jul 16
66 citations
Interpretation of biological experiments changes with evolution of the Gene Ontology and its annotations.
Aurelie Tomczak, Jonathan M. Mortensen, Rainer Winnenburg, Charles Liu, Dominique T. Alessi, Varsha Swamy, Francesco Vallania, Shane Lofgren, Winston A. Haynes, Nigam ...> ;Scientific Reports. 2018 Mar 23
3 citations
Analyzing user interactions with biomedical ontologies
Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen> ;Web Semantics. 2018 Mar 1
1 citations
How Sustainable are Biomedical Ontologies
James Geller, Vipina Kuttichi Keloth, Mark A. Musen> ;AMIA ... Annual Symposium Proceedings. AMIA Symposium. 2018 Jan 1
2 citations
BiOnIC: A Catalog of User Interactions with Biomedical Ontologies
Maulik R. Kamdar, Simon Walk, Tania Tudorache, Mark A. Musen> ;The Semantic Web--ISWC .... 2017 Oct 21
8 citations
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments.
Rafael S Gonçalves, Martin J O'Connor, Marcos Martínez-Romero, Attila L Egyedi, Debra Willrett, John Graybeal, Mark A Musen> ;The Semantic Web--ISWC .... 2017 Oct 1
26 citations
Precision annotation of digital samples in NCBI's gene expression omnibus.
Dexter Hadley, James Pan, Osama El-Sayed, Jihad Aljabban, Imad Aljabban, Tej D. Azad, Mohamad Omar Hadied, Shuaib Raza, Benjamin Abhishek Rayikanti, Bin Chen, Hyojung ...> ;Scientific Data. 2017 Sep 19
10 citations
An ontology-driven tool for structured data acquisition using Web forms.
Rafael S. Gonçalves, Samson W. Tu, Csongor Nyulas, Michael J. Tierney, Mark A. Musen> ;Journal of Biomedical Semantics. 2017 Aug 1
High-Risk Drug-Drug Interactions Between Clinical Practice Guidelines for Management of Chronic Conditions.
Geoffrey J. Tso, Samson W. Tu, Mark A. Musen, Mary K. Goldstein> ;AMIA Joint Summits on Translational Science Proceedings. AMIA Joint Summits on Translational Science. 2017 Jul 26
8 citations
An empirical analysis of ontology reuse in BioPortal.
Christopher Ochs, Yehoshua Perl, James Geller, Sivaram Arabandi, Tania Tudorache, Mark A. Musen> ;Journal of Biomedical Informatics. 2017 Jul 1
16 citations
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.
Marcos Martínez-Romero, Clement Jonquet, Martin J O'Connor, John Graybeal, Alejandro Pazos, Mark A Musen> ;Journal of Biomedical Semantics. 2017 Jun 7
11 citations
PhLeGrA: Graph Analytics in Pharmacology over the Web of Life Sciences Linked Open Data
Maulik R. Kamdar, Mark A. Musen> ;Proceedings of the ... International World-Wide Web Conference. International WWW Conference. 2017 Apr 3
9 citations
Use of ontology structure and Bayesian models to aid the crowdsourcing of ICD-11 sanctioning rules
Yun Lou, Samson W. Tu, Csongor Nyulas, Tania Tudorache, Robert J.G. Chalmers, Mark A. Musen> ;Journal of Biomedical Informatics. 2017 Apr 1
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Press Mentions

Compassionate IntelligenceSeptember 24th, 2018

MarkMusenMDPhD

Dr. Musen is on Doximity

Education & Training

Certifications & Licensure

Awards, Honors, & Recognition

Publications & Presentations

Press Mentions

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