MichaelTressMD

PubMed

• 211 citations
  Alternative Splicing May Not Be the Key to Proteome Complexity
  Michael L. Tress, Federico Abascal, Alfonso Valencia> ;Trends in Biochemical Sciences. 2017 Feb 1
• 87 citations
  Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.
  Federico Abascal, André Corvelo, Fernando Cruz, José Luis Villanueva-Cañas, Anna Vlasova, Marina Marcet-Houben, Begoña Martínez-Cruz, Jade Yu Cheng, Pablo Prieto, Víct...> ;Genome Biology. 2016 Dec 14
• An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
  Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin...> ;Genome Biol.. 2016-09-07
• 16 citations
  Analysis of Paired Primary-Metastatic Hormone-Receptor Positive Breast Tumors (HRPBC) Uncovers Potential Novel Drivers of Hormonal Resistance
  Luis Manso, Silvana Mouron, Michael L. Tress, Gonzalo Gómez-López, Manuel Morente, Eva Ciruelos, Miriam Rubio-Camarillo, José Luis Rodríguez-Peralto, Miguel Angel Puja...> ;Plos One. 2016 May 19
• 20 citations
  The potential clinical impact of the release of two drafts of the human proteome
  Iakes Ezkurdia, Enrique Calvo, Angela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Expert Review of Proteomics. 2015 Oct 23
• 25 citations
  Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2α and ZNF451 in mammals
  Federico Abascal, Michael L. Tress, Alfonso Valencia> ;Bioinformatics. 2015 Jul 15
• 17 citations
  APPRIS WebServer and WebServices
  Jose Manuel Rodriguez, Angel Carro, Alfonso Valencia, Michael L. Tress> ;Nucleic Acids Research. 2015 Jul 1
• 58 citations
  Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.
  Federico Abascal, Iakes Ezkurdia, Juan Rodriguez-Rivas, Jose Manuel Rodriguez, Angela del Pozo, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Plos Computational Biology. 2015 Jun 10
• 24 citations
  The evolutionary fate of alternatively spliced homologous exons after gene duplication.
  Federico Abascal, Michael L. Tress, Alfonso Valencia> ;Genome Biology and Evolution. 2015 Jun 1
• 2 citations
  Correction to “Analyzing the First Drafts of the Human Proteome”
  Iakes Ezkurdia, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Journal of Proteome Research. 2015 Apr 3
• 80 citations
  Most highly expressed protein-coding genes have a single dominant isoform.
  Iakes Ezkurdia, Jose Manuel Rodriguez, Enrique Carrillo-de Santa Pau, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Journal of Proteome Research. 2015 Mar 11
• 87 citations
  Analyzing the First Drafts of the Human Proteome
  Iakes Ezkurdia, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Journal of Proteome Research. 2014 Jul 16
• 308 citations
  Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
  Iakes Ezkurdia, David Juan, Jose Manuel Rodriguez, Adam Frankish, Mark Diekhans, Jennifer Harrow, Jesús Vázquez, Alfonso Valencia, Michael L. Tress> ;Human Molecular Genetics. 2014 Jun 16
• 15 citations
  FireDB: a compendium of biological and pharmacologically relevant ligands
  Paolo Maietta, Gonzalo Lopez, Angel Carro, Benjamin J. Pingilley, Leticia G. Leon, Alfonso Valencia, Michael L. Tress> ;Nucleic Acids Research. 2014 Jan 1
• 145 citations
  APPRIS: annotation of principal and alternative splice isoforms
  Jose Manuel Rodriguez, Paolo Maietta, Iakes Ezkurdia, Alessandro Pietrelli, Jan-Jaap Wesselink, Gonzalo Lopez, Alfonso Valencia, Michael L. Tress> ;Nucleic Acids Research. 2013 Jan 1
• 3193 citations
  GENCODE: The reference human genome annotation for The ENCODE Project
  Jennifer Harrow, Adam Frankish, José M. González, Electra Tapanari, Mark Diekhans, Felix Kokocinski, Bronwen Aken, Daniel Barrell, Amonida Zadissa, Stephen M. J. Searl...> ;Genome Research. 2012 Sep 1
• 63 citations
  Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function
  Iakes Ezkurdia, Angela del Pozo, Adam Frankish, Jose Manuel Rodriguez, Jennifer Harrow, Keith Ashman, Alfonso Valencia, Michael L. Tress> ;Molecular Biology and Evolution. 2012 Mar 22
• 103 citations
  Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts
  Milana Frenkel-Morgenstern, Vincent Lacroix, Iakes Ezkurdia, Yishai Levin, Alexandra Gabashvili, Jaime Prilusky, Angela del Pozo, Michael L. Tress, Rory Johnson, Roder...> ;Genome Research. 2012 Jul 1
• 194 citations
  Evidence for transcript networks composed of chimeric RNAs in human cells.
  Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M. Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chras...> ;Plos One. 2012 Jan 4
• 4 citations
  Protein structural domains: definition and prediction.
  Iakes Ezkurdia, Michael L. Tress> ;Current Protocols in Protein Science. 2011 Nov 1
• 43 citations
  firestar—advances in the prediction of functionally important residues
  Gonzalo Lopez, Paolo Maietta, Jose Manuel Rodriguez, Alfonso Valencia, Michael L. Tress> ;Nucleic Acids Research. 2011 Jul 1
• 22 citations
  Predicted residue-residue contacts can help the scoring of 3D models.
  Michael L. Tress, Alfonso Valencia> ;Proteins. 2010 Jun 1
• 41 citations
  Sequence-based feature prediction and annotation of proteins
  Agnieszka S. Juncker, Lars Juhl Jensen, Andrea Pierleoni, Andreas Bernsel, Michael L. Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A. Ouzounis, Rita...> ;Genome Biology. 2009 Feb 2
• 30 citations
  Assessment of ligand binding residue predictions in CASP8.
  Gonzalo Lopez, Iakes Ezkurdia, Michael L. Tress> ;Proteins. 2009 Jan 1
• 50 citations
  Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8
  Iakes Ezkurdia, Osvaldo Graña, Jose M. G. Izarzugaza, Michael L. Tress> ;Proteins. 2009 Jan 1
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