PaulKhavariMD

Dermatology • Stanford, CA

Professor, Dermatology, Stanford University Medical Center

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Office
269 Campus Dr
Ccsr 2155
Stanford, CA 94305
Phone+1 650-852-3494
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Education & Training

Yale-New Haven Medical CenterResidency, Dermatology, 1988 - 1990
Yale School of MedicineClass of 1988

Certifications & Licensure

CA State Medical License 1990 - 2026
American Board of Dermatology Dermatology

Awards, Honors, & Recognition

Elected Member The American Society for Clinical Investigation, 1999
Fellow (FAAD) American Academy of Dermatology

Clinical Trials

Characteristics of Patients With Recessive Dystrophic Epidermolysis Bullosa Start of enrollment: 2009 Nov 10
Recruiting
Gene Transfer for Recessive Dystrophic Epidermolysis Bullosa Start of enrollment: 2010 Oct 05
Completed
Phase 1, Phase 2
Analysis of Cutaneous and Hematologic Disorders by High-Throughput Nucleic Acid Sequencing Start of enrollment: 2011 Jun 01
Terminated

Publications & Presentations

PubMed

43 citations
Super-resolved spatial transcriptomics by deep data fusion.
Ludvig Bergenstråhle, Bryan He, Joseph Bergenstråhle, Xesús Abalo, Reza Mirzazadeh, Kim Thrane, Andrew L. Ji, Alma Andersson, Ludvig Larsson, Nathalie Stakenborg, Guy ...> ;Nature Biotechnology. 2021 Nov 29
34 citations
The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation
Daniel S Kim, Viviana I. Risca, David Reynolds, James Chappell, Adam J. Rubin, Namyoung Jung, Laura K. Donohue, Vanessa Lopez-Pajares, Arwa Kathiria, Minyi Shi, Zhixin...> ;Nature Genetics. 2021 Oct 14
21 citations
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation.
Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Aimee Beck, Laura K. Donohue, Ian D Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David Reynolds, Xue ...> ;Plos Pathogens. 2021 Oct 1
16 citations
Mutant collagen COL11A1 enhances cancerous invasion.
Carolyn S. Lee, Zurab Siprashvili, Angela Mah, Tomas Bencomo, L. Elcavage, Yonglu Che, Rajani M Shenoy, Sumaira Z. Aasi, Paul A. Khavari> ;Oncogene. 2021 Sep 28
319 citations
Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
Sophia K Longo, Margaret Guo, Andrew L. Ji, Paul A. Khavari> ;Nature Reviews. Genetics. 2021 Jun 18
77 citations
SARS-CoV-2 B.1.1.7 and B.1.351 spike variants bind human ACE2 with increased affinity.
Muthukumar Ramanathan, Ian D Ferguson, Weili Miao, Paul A. Khavari> ;The Lancet. Infectious Diseases. 2021 May 19
19 citations
easyCLIP analysis of RNA-protein interactions incorporating absolute quantification.
Douglas F. Porter, Weili Miao, Xue Yang, Grant A. Goda, Andrew L. Ji, Laura K. Donohue, Maria M. Aleman, Daniel Dominguez, Paul A. Khavari> ;Nature Communications. 2021 Mar 10
14 citations
The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian D Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David Reynolds, Xue Yang, Yang Z...> ;Biorxiv. 2021 Feb 23
77 citations
SARS-CoV-2 B.1.1.7 and B.1.351 Spike variants bind human ACE2 with increased affinity
Muthukumar Ramanathan, Ian D Ferguson, Weili Miao, Paul A. Khavari> ;Biorxiv. 2021 Feb 22
39 citations
Structural modularity of the XIST ribonucleoprotein complex.
Zhipeng Lu, Jimmy K. Guo, Yuning Wei, Diana R. Dou, Brian J. Zarnegar, Qing Ma, Rui Li, Yang Zhao, Fan Liu, Hani Choudhry, Paul A. Khavari, Howard Y. Chang> ;Nature Communications. 2020 Dec 2
352 citations
Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma.
Andrew L Ji, Adam J Rubin, Kim Thrane, Sizun Jiang, David L Reynolds, Robin M Meyers, Margaret G Guo, Benson M George, Annelie Mollbrink, Joseph Bergenstråhle, Ludvig ...> ;Cell. 2020 Sep 17
215 citations
Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma.
Andrew L Ji, Adam J Rubin, Kim Thrane, Sizun Jiang, David L Reynolds, Robin M Meyers, Margaret G Guo, Benson M George, Annelie Mollbrink, Joseph Bergenstråhle, Ludvig ...> ;Cell. 2020 Jul 23
29 citations
Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation
Ava C. Carter, Jin Xu, Meagan Y Nakamoto, Yuning Wei, Brian J. Zarnegar, Quanming Shi, James P. Broughton, Ryan C. Ransom, Ankit Salhotra, Surya Nagaraja, Rui Li, Dian...> ;Elife. 2020 May 7
18 citations
Genetic and genomic studies of pathogenic EXOSC2 mutations in the newly described disease SHRF implicate the autophagy pathway in disease pathogenesis.
Xue Yang, Vafa Bayat, Nataliya DiDonato, Yang Zhao, Brian J. Zarnegar, Zurab Siprashvili, Vanessa Lopez-Pajares, Tao Sun, Shiying Tao, Chenjian Li, Andreas Rump, Paul ...> ;Human Molecular Genetics. 2020 Mar 13
24 citations
Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma
Kavita Y. Sarin, Yuan Lin, Roxana Daneshjou, Andrey Ziyatdinov, Gudmar Thorleifsson, Adam J. Rubin, Luba M. Pardo, Wenting Wu, Paul A. Khavari, André G. Uitterlinden, ...> ;Nature Communications. 2020 Feb 10
14 citations
KRAS regulation by small non-coding RNAs and SNARE proteins.
Yonglu Che, Zurab Siprashvili, Joanna R. Kovalski, Tiffany Jiang, Glenn G. Wozniak, L. Elcavage, Paul A. Khavari> ;Nature Communications. 2019 Nov 11
5 citations
Ras functional proximity proteomics establishes mTORC2 as new direct ras effector.
Joanna R. Kovalski, Ronald L. Shanderson, Paul A. Khavari> ;Oncotarget. 2019 Aug 27
58 citations
HiChIRP reveals RNA-associated chromosome conformation.
Maxwell R. Mumbach, Jeffrey M. Granja, Ryan A. Flynn, Caitlin M. Roake, Ansuman T. Satpathy, Adam J. Rubin, Yanyan Qi, Zhaozhao Jiang, Shadi Shams, Bryan H. Louie, Jim...> ;Nature Methods. 2019 May 27
10 citations
Impact of a patient-derived hepatitis C viral RNA genome with a mutated microRNA binding site.
Miguel A. Mata, S. Neben, Karim Majzoub, Jan E. Carette, Muthukumar Ramanathan, Paul A. Khavari, Peter Sarnow> ;Plos Pathogens. 2019 May 10
2 citations
Author Correction: Methods to study RNA-protein interactions.
Muthukumar Ramanathan, Douglas F. Porter, Paul A. Khavari> ;Nature Methods. 2019 Apr 1
172 citations
Methods to Study RNA-protein Interactions
Muthukumar Ramanathan, Douglas F. Porter, Paul A. Khavari> ;Nature Methods. 2019 Feb 25
87 citations
The Functional Proximal Proteome of Oncogenic Ras Includes mTORC2
Joanna R. Kovalski, Aparna Bhaduri, Ashley M. Zehnder, Poornima H. Neela, Yonglu Che, Glenn G. Wozniak, Paul A. Khavari> ;Molecular Cell. 2019 Feb 21
17 citations
Profiling of rotavirus 3'UTR-binding proteins reveals the ATP synthase subunit ATP5B as a host factor that supports late-stage virus replication.
Lili Ren, Siyuan Ding, Yanhua Song, Bin Li, Muthukumar Ramanathan, Julia Co, Manuel R. Amieva, Paul A. Khavari, Harry B. Greenberg> ;The Journal of Biological Chemistry. 2019 Apr 12
157 citations
Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks
Adam J. Rubin, Kevin R. Parker, Ansuman T. Satpathy, Yanyan Qi, Beijing Wu, Alvin J. Ong, Maxwell R. Mumbach, Andrew L. Ji, Daniel S Kim, Seung Woo Cho, Brian J. Zarne...> ;Cell. 2019 Jan 10
40 citations
Retinoic acid and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment
Jillian M. Pattison, Sandra P. Melo, Samantha N. Piekos, Jessica L. Torkelson, Elizaveta Bashkirova, Maxwell R. Mumbach, Charlotte M. Rajasingh, Hanson H. Zhen, Lingji...> ;Nature Genetics. 2018 Nov 5
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Journal Articles

Retinoic Acid and BMP4 Cooperate with p63 to Alter Chromatin Dynamics During Surface Epithelial Commitment
Anthony E Oro, Howard Y Chang, Paul A Khavari, Nature

Press Mentions

‘DNA Origami’ Triggers Tissue Generation in Early DevelopmentNovember 5th, 2018
Genome Architecture Guides Stem Cell Fate, Stanford Researchers FindAugust 15th, 2017
Gene Therapy for Blistering Skin Disease Appears to Enhance Healing in Clinical TrialNovember 1st, 2016
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