PaulDennisSimonsonMD

PubMed

• Haploidentical allogeneic stem cell transplantation with post-transplant cyclophosphamide and subsequent kidney transplant for patients with severe sickle cell disease...
  Alexandra Gomez-Arteaga, Nina Orfali, Michelle Pasciolla, Ayanna Baptiste, Inna Guindine, Jingmei Hsu, Jonathan Lin, Sebastian A Mayer, Adrienne A Phillips, Tsiporah B...> ;Bone Marrow Transplantation. 2023 Jul 1
• Angioimmunoblastic T-cell lymphoma presenting with severe plasmacytosis mimicking plasma cell leukemia.
  Mateo Mejia Saldarriaga, Mohammad Alhomoud, Gail Roboz, John N Allan, Jia Ruan, Madhu M Ouseph, Paul D Simonson, Mark Bustoros, Ruben Niesvizky> ;American Journal of Hematology. 2023 Jul 1
• 4 citations
  Tyramide-conjugated DNA barcodes enable signal amplification for multiparametric CODEX imaging.
  Paul D Simonson, Itzel Valencia, Sanjay S Patel> ;Communications Biology. 2022 Jun 27
• 5 citations
  Potential for Process Improvement of Clinical Flow Cytometry by Incorporating Real-Time Automated Screening of Data to Expedite Addition of Antibody Panels.
  Paul D. Simonson, Aaron Y. Lee, David Wu> ;American Journal of Clinical Pathology. 2021 Nov 1
• 7 citations
  De Novo Identification and Visualization of Important Cell Populations for Classic Hodgkin Lymphoma Using Flow Cytometry and Machine Learning.
  Paul D. Simonson, Yue Wu, David Wu, Jonathan R. Fromm, Aaron Y. Lee> ;American Journal of Clinical Pathology. 2021 Nov 8
• 39 citations
  Hospitalization and mortality associated with SARS-CoV-2 viral clades in COVID-19.
  Kenji Nakamichi, Jolie Z. Shen, Cecilia S Lee, Aaron Y. Lee, Emma A. Roberts, Paul D. Simonson, Pavitra Roychoudhury, Jessica Andriesen, April K. Randhawa, Patrick C. ...> ;Scientific Reports. 2021 Feb 26
• 46 citations
  Profiling of immune dysfunction in COVID-19 patients allows early prediction of disease progression.
  André F. Rendeiro, Joseph Casano, Charles Kyriakos Vorkas, Harjot K. Singh, Ayana Morales, Robert A. DeSimone, Grant B Ellsworth, Rosemary Soave, Shashi N Kapadia, Koh...> ;Life Science Alliance. 2021 Feb 1
• 6 citations
  Comparison of Multiple Clinical Testing Modalities for Assessment of NPM1-Mutant AML.
  Amanda Lopez, Sanjay S. Patel, Julia T. Geyer, Joelle Racchumi, Amy Chadburn, Paul D. Simonson, Madhu M. Ouseph, Giorgio Inghirami, Nuria Mencia-Trinchant, Monica L. G...> ;Frontiers in Oncology. 2021 Aug 30
• 2 citations
  Creating Virtual Hematoxylin and Eosin Images using Samples Imaged on a Commercial CODEX Platform.
  Paul D Simonson, Xiaobing Ren, Jonathan R Fromm> ;Journal of Pathology Informatics. 2021 Jan 1
• 5 citations
  Outcomes associated with SARS-CoV-2 viral clades in COVID-19
  Kenji Nakamichi, Jie Shen, Cecilia S Lee, Aaron Y. Lee, Emma A. Roberts, Paul D. Simonson, Pavitra Roychoudhury, Jessica Andriesen, April K. Randhawa, Patrick C. Mathi...> ;Medrxiv. 2020 Sep 25
• 11 citations
  Longitudinal immune profiling of mild and severe COVID-19 reveals innate and adaptive immune dysfunction and provides an early prediction tool for clinical progression
  André F. Rendeiro, Joseph Casano, Charles Kyriakos Vorkas, Harjot K. Singh, Ayana Morales, Robert A. DeSimone, Grant B Ellsworth, Rosemary Soave, Shashi N Kapadia, Koh...> ;Medrxiv. 2020 Sep 9
• 4 citations
  Macrophage activation syndrome in a patient with axial spondyloarthritis on adalimumab
  Rahaf Baker, Jean W. Liew, Paul D. Simonson, Lori Soma, Gordon Starkebaum> ;Clinical Rheumatology. 2019 Feb 1
• 1 citations
  Characterization of bilirubin interference in three commonly used digoxin assays.
  Paul D. Simonson, Katie H. Kim, Gabrielle N Winston-McPherson, Rugvedita Parakh, Diane Yamaguchi, Anna E. Merrill, Jane A. Dickerson, Dina N. Greene> ;Clinical Biochemistry. 2019 Jan 1
• 10 citations
  Acute Liver Failure Due to Echovirus 9 Associated With Persistent B-Cell Depletion From Rituximab.
  Kristina L. Bajema, Paul D. Simonson, Alexander L. Greninger, Basak Çoruh, Paul S. Pottinger, Renuka Bhattacharya, Iris Liou, Florencia G. Jalikis, Corinne L Fligner, ...> ;Open Forum Infectious Diseases. 2017 Jul 1
• 11 citations
  Probing the Heterogeneity of Protein Kinase Activation in Cells by Super-resolution Microscopy
  Ruobing Zhang, Gilbert O. Fruhwirth, Oana Coban, James E. Barrett, Thomas Burgoyne, Sang Hak Lee, Paul D. Simonson, Murat Baday, Boris N. Kholodenko, Clare E. Futter, ...> ;ACS Nano. 2017 Jan 24
• 53 citations
  Using fixed fiduciary markers for stage drift correction
  Sang Hak Lee, Murat Baday, Marco Tjioe, Paul D. Simonson, Ruobing Zhang, En Cai, Paul R. Selvin> ;Optics Express. 2012 May 21
• 55 citations
  Single-molecule-based super-resolution images in the presence of multiple fluorophores.
  Paul D. Simonson, Eli Rothenberg, Paul R. Selvin> ;Nano Letters. 2011 Nov 9
• 29 citations
  Two-photon 3D FIONA of individual quantum dots in an aqueous environment.
  Ruobing Zhang, Eli Rothenberg, Gilbert O. Fruhwirth, Paul D. Simonson, Fangfu Ye, Ido Golding, Tony Ng, Ward Lopes, Paul R. Selvin> ;Nano Letters. 2011 Sep 13
• 35 citations
  Counting bungarotoxin binding sites of nicotinic acetylcholine receptors in mammalian cells with high signal/noise ratios.
  Paul D. Simonson, Hannah A. DeBerg, Pinghua Ge, John K. Alexander, Okunola Jeyifous, William N. Green, Paul R. Selvin> ;Biophysical Journal. 2010 Nov 17
• Modulation of an optical needle's reflectivity alters the average photon path through scattering media.
  Paul D. Simonson, Enrico D’Amico, Enrico Gratton> ;Journal of Biomedical Optics. 2006 Jan 1
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Journal Articles

• Characterization of bilirubin interference in three commonly used digoxin assays  
  Simonson PD, Kim KH, Winston-McPherson G, Parakh RS, Yamaguchi D, Merrill AE, Dickerson JA, Greene DN, Clin Biochem, 1/11/2018
• Macrophage Activation Syndrome in a Patient with Axial Spondyloarthritis on Adalimumab  
  Baker R, Liew JW, Simonson PD, Soma LA, Starkebaum G, Clinical Rheumatology, 1/7/2018
• Acute Liver Failure Due to Echovirus 9 Associated with Persistent B Cell Depletion from Rituximab  
  Bajema KL, Simonson PD, Greninger AL, Coruh B, Pottinger PS, Bhattacharya R, Liou IW, Jalikis FG, Fligner CL, Rakita RM, Open Forum Infectious Diseases, 1/1/2017
• Probing the Heterogeneity of Protein Kinase Activation in Cells by Super-Resolution Microscopy  
  Zhang R, Fruhwirth GO, Coban O, Barrett J, Burgoyne T, Lee SH, Simonson PD, Baday M, Kholodenko BN, Gutter CE, Ng T, Selvin PR, ACS Nano, 1/3/2016
• Using fixed fiduciary markers for stage drift correction  
  Lee S.H., Baday M., Tjioe M., Simonson P.D., Zhang R., Cai E., Selvin P.R., Optics Express, 1/1/2012
• Two-Photon 3D FIONA of individual quantum dots in an aqueous environment  
  Zhang R., Rothenberg E., Fruhwirth G., Simonson P.D., Ye F., Ido Golding, Ng T., Lopes W., Selvin P.R., Nano Letters, 1/1/2011
• Single-molecule based superresolution images in the presence of multiple fluorophores  
  Simonson P.D., Rothenberg E., Selvin P.R., Nano Letters, 1/1/2011
• Counting bungarotoxin binding sites of nicotinic acetylcholine receptors in mammalian cells with high signal-to-noise ratios  
  Simonson PD., Deberg HA., Ge P., Alexander JK, Jeyifous O., Green WN, Selvin PR, Biophysical Journal, 1/1/2010
• Modulation of an optical needle's reflectivity alters the average photon path through scattering media  
  Simonson PD, D'Amico E, Gratton E, J. Biomed. Optics, 1/1/2006
• Proposal and proof of principle for a novel optical biopsy needle: Modulating an optical needle's reflectivity alters the average photon path in scattering media  
  Simonson P.D., D'Amico E., Gratton E., Biomedical Optics, Technical Digest (CD), 1/1/2006
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Books/Book Chapters

• Imaging: A Laboratory Manual 
  Chapter: FIONA: Nanometer fluorescence imaging 
  Simonson PD, Selvin PREditors: Rafael Yuste.Cold Spring Harbor Press2011

Abstracts/Posters

• Robust epithelial cell staining in breast tissue for light sheet microscopy
  Simonson PD, Glaser AK, Dintzis SM, Liu JTC, Pathology Informatics Summit, Pittsburgh, PA, 1/1/2019
• Automated calculation of turnaround times using data warehouses for publication in online test menus
  Simonson PD, Hoffman NG, Mathias PC, ACLPS Annual Meeting, Salt Lake City, UT, 1/1/2019
• Quantitative immunostaining in breast tissue.
  Simonson PD, Wang Y, Sompuram SR, Liu JTC, Dintzis SM, ACLPS Annual Meeting, Houston, TX, 1/1/2018
• Adding value to hematocrit testing using analytics
  Simonson PD, Mathias PC, Sabath D, ACLPS meeting at Yale, 1/1/2017
• Accurate Quantification of Estrogen Receptor and Her2 Expression Using Quantum Dots
  Simonson PD; Wang Y; Liu J; and Dintzis SM, College of American Pathologists Annual Meeting, National Harbor, MD, 1/1/2017
• Successful IHC Staining of Pancreatic Tissue after Optical Clearing for Advanced Imaging
  Simonson PD, Das R, Seibel EJ, Upton MP, USCAP Annual Meeting, Seattle, WA, 1/15/2016
• A Comparison Study Of GATA3, S100P, and Uroplakin II In Genitourinary Cancers
  Simonson PD, Brooks JM, True LD, Tretiakova MS, CAP Annual Meeting,, Nashville, TN, 1/1/2015
• Simple method for stage drift correction
  Lee S.H., Baday M., Tjioe M., Simonson P.D., Selvin P.R., Biophysical Society 56th Annual Meeting, San Diego, CA, 1/27/2012
• Gastric Schwannoma
  Boregowda U.N., Tangella K.R., Simonson P., Yan B., Hammoud I.O., ACG National Conference, Las Vegas, NV, 1/22/2012
• New approaches in super-resolution fluorescence imaging
  Simonson P.D., College of Medicine Annual Research Symposium, Champaign, IL, 1/21/2011
• Super-resolution imaging of chromosomal DNA in cells
  Simonson P.D., Rothenberg E., Selvin P.R., Biophysical Society 55th Annual Meeting, Baltimore, MD, 1/9/2011
• Measuring the spatial arrangement of NMJ-nAChR ion channel proteins in the cell membrane
  DeBerg H., Friedman N., Nguyen C.T., Simonson P., Selvin P., Biophysical Society 55th Annual Meeting, Baltimore, MD, 1/8/2011
• Super-resolution imaging of chromosomal DNA in cells using a combination of PAINT and PhILM
  Simonson P.D., Rothenberg E., Selvin P.R., Aspen Center for Physics Winter Conference on Single Molecule Biophysics, Aspen, CO, 1/1/2011
• Creating super-resolution images using standard photobleaching and blinking movies
  Simonson P.D., Rothenberg E., Selvin P.R., Biophysical Society 54th Annual Meeting; College of Medicine Research Symposium, San Francisco, CA, 2010; Champaign, IL, 2011, 1/1/2010
• Single-Molecule Imaging of AMPA and Nicotinic Acetylcholine Receptors in Mammalian Cells
  Simonson P.D., Deberg H., Alexander J., Jeyifous O., Green W.N., Selvin P.R., Biophysical Society 53rd Annual Meeting, Baltimore, MD, 1/1/2009
• Decoding Kinesin�s Asymmetric Walk Through Neck Rotation Experiments
  Simonson P.D., Rosenfeld S.S., Selvin P.R., Understanding Complex Systems, Urbana, IL, 1/12/2008
• Modulation of an optical needle's reflectivity alters the average photon path through scattering media
  Simonson P.D., D�Amico E., Gratton E., NTROI Breast Cancer Research Symposium, Irvine, CA, 1/1/2005
• Giant Fluctuations in Flow Through Fractured Media: A Stochastic, Self-Organized Dynamics Model
  Peak D., Datwyler R., Rasmussen N., Simonson P., Wood T.R., Stoops T.M., Dynamics Days, Baltimore, MD, 1/4/2002
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Lectures

• CAR T Cell Therapy 
  Seattle, WA - 1/1/2019
• Development of Quantitative Immunofluorescence Imaging Techniques for Pathology 
  University of Washington, Seattle, WA - 1/1/2019
• Periodic mini-lectures 
  1/1/2018
• Interesting case presentations for genetics laboratory staff 
  University of Washington Medical Center, Seattle, WA - 1/1/2018
• We can do better! Improving quantitative immunostaining in anatomic pathology using modern fluorescence approaches 
  Children�s Hospital of Los Angeles, Los Angeles, CA, 2018; Salt Lake City, UT, 2018 - 1/1/2018
• Immature Platelet Fraction 
  Harborview Medical Center, Seattle, WA - 1/1/2017
• Automated fluorescence image interpretation using machine learning with a comparison of available instruments 
  University of Washington, Seattle, WA - 1/1/2017
• CAR-T Cell Therapy 
  University of Washington, Seattle, WA - 1/1/2017
• Quantitative Immunostaining in Breast Tissue 
  University of Washington, Seattle, WA - 1/1/2017
• Quantitative immunostaining using quantum dots 
  University of Washington, Seattle, WA - 1/1/2016
• Universal MSI Screening 
  University of Washington Medical Center, Seattle, WA - 1/1/2016
• Using Hematocrit Values to Identify Bleeding Events 
  University of Washington, Seattle, WA - 1/1/2016
• New approaches in super-resolution fluorescence imaging 
  Washington University in St. Louis, St. Louis, MO - 1/1/2013
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Other

• Using photo-instability to quantify fluorophores and achieve super-resolution imaging 
  Simonson P.D., University of Illinois at Urbana-Champaign
  Urbana, IL - 1/1/2010