SheelMukeshShahMDPhD

Journal Articles

• Dynamics and spatial genomics of the nascent transcriptome by intron seqFISH  
  Shah S, Takei Y, Zhou W, Lubeck E, Yun J, Eng CH, Koulena N, Cronin C, Karp C, Liaw E, Amin M, and Cai L, Cell, 1/1/2018
• seqFISH Accurately Detects Transcripts in Single Cells and Reveals Robust Spatial Organization in the Hippocampus  
  Shah S, Lubeck E, Zhou W, and Cai L, Neuron, 1/1/2017
• In situ transcription profiling of single cells reveals spatial organization of cells in the mouse hippocampus  
  Shah S, Lubeck E, Zhou W, and Cai L, Neuron, 1/1/2016
• Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing  
  Yang B, Treweek J, Kulkarni R, Deverman B, Chen C, Lubeck E, Shah S, Cai L, Gradinaru V, Cell, 1/1/2014
• Nonlinear signatures in active microbead rheology of entangled polymer solutions  
  Cribb J, Vasquez PA, Norris S, Moore P, Shah S, Forest MG, Superfine R, J. Rheol., 1/1/2013
• An automated live imaging platform for studying merozoite egress-invasion in malaria cultures  
  Crick A, Tiffert T, Shah S, Kotar J, Lew V, Cicuta P, Biophysical Journal, 1/1/2013
• Cylinders vs spheres: biofluid shear thinning in driven nanoparticle transport  
  Cribb J, Meehan T, Shah S, Skinner K, Superfine R, Ann Biomed Eng, 1/1/2010
• Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data  
  Zhu Q, Shah S, Dries R, Cai L, Yuan G.C., Nature Biotechnology, 1/29/2018
• Profiling the Transcriptome by RNA SPOTs  
  Eng C, Shah S, Thomassie J, and Cai L, Nature Methods, 1/13/2017
• Multiplexed dynamic imaging of genomic loci in single cells by combined CRISPR imaging and sequential DNA FISH  
  Takei Y, Shah S, Harvey S, Qi L, Cai L, Biophysical Journal, 1/9./2017
• Single-molecule RNA detection at depth via hybridization chain reaction and tissue hydrogel embedding and clearing  
  Shah S, Lubeck E, Schwarzkopf M, He T, Greenbaum A, Sohn C, Lignell A, Choi H, Gradinaru V, Pierce N, and Cai L, Development, 1/2./2016
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Abstracts/Posters

• Quantitative Multiplexed In Situ mRNA Profiling
  Shah, S., Lubeck, E., Zhou, W., Cai, L., Single Cell Genomics 2016, Hinxton, GBR, 1/1/2016
• Single-cell in situ RNA profiling by sequential hybridization
  Lubeck, E., Shah, S., Cai, L., Third Annual Winter q-bio Meeting, Maui, HI, 1/1/2015

Lectures

• Highly Multiplexed Single Cell RNA Detection in Mouse Brain Tissue 
  Dana Point, CA - 1/1/2015