SydneyRamirezMDPhD

PubMed

• 2 citations
  Dynamic activity in cis-regulatory elements of leukocytes identifies transcription factor activation and stratifies COVID-19 severity in ICU patients.
  Patel, A., Michael Tun Yin Lam, Sascha H Duttke, Mazen F Odish, Hiep D Le, Emily A Hansen, Celina T Nguyen, Samantha Trescott, Roy Kim, Shaunak Deota, Max W Chang, Arj...> ;Cell Reports. Medicine. 2023 Feb 21
• 2 citations
  Correction to: Increased Peripheral Blood Neutrophil Activation Phenotypes and Neutrophil Extracellular Trap Formation in Critically Ill Coronavirus Disease 2019 Patie...
  Jorge A Masso-Silva, Alexander Moshensky, Michael T Y Lam, Mazen Odish, Arjun Patel, Le Xu, Emily Hansen, Samantha Trescott, Celina Nguyen, Roy Kim, Katherine Perofsky...> ;Clinical Infectious Diseases. 2022 May 30
• 22 citations
  Development of a T cell-based immunodiagnostic system to effectively distinguish SARS-CoV-2 infection and COVID-19 vaccination status.
  Esther Dawen Yu, Eric Wang, Emily Garrigan, Benjamin Goodwin, Aaron Sutherland, Alison Tarke, James Chang, Rosa Isela Gálvez, Jose Mateus, Sydney I Ramirez, Stephen A ...> ;Cell Host & Microbe. 2022 Mar 9
• 4 citations
  Profiling Transcription Initiation in Peripheral Leukocytes Reveals Severity-Associated Cis-Regulatory Elements in Critical COVID-19
  Michael Tun Yin Lam, Sascha H. Duttke, Mazen Odish, Hiep D. Le, Emily Hansen, Celina T Nguyen, Samantha Trescott, Roy Kim, Shaunak Deota, Max W Chang, Arjun Patel, Mar...> ;Biorxiv. 2021 Aug 24
• 402 citations
  Impact of SARS-CoV-2 variants on the total CD4 + and CD8 + T cell reactivity in infected or vaccinated individuals.
  Alison Tarke, John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M. Dan, Benjamin Goodwin, Paul Rubiro, Aaron Sutherland, Eric Wang, April Frazier, Sydney ...> ;Cell Reports. Medicine. 2021 Jul 2
• 30 citations
  AI-guided discovery of the invariant host response to viral pandemics.
  Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Ro...> ;Ebiomedicine. 2021 Jun 1
• 66 citations
  Increased peripheral blood neutrophil activation phenotypes and NETosis in critically ill COVID-19 patients: a case series and review of the literature.
  Patel, A., Jorge A. Masso-Silva, A. Moshensky, Michael T. Lam, Mazen Odish, Arjun Patel, Le Xu, Emily Hansen, Samantha Trescott, Celina Nguyen, Roy Kim, Katherine Pero...> ;Clinical Infectious Diseases. 2021 May 14
• 259 citations
  Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases.
  Alison Tarke, John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Me...> ;Cell Reports. Medicine. 2021 Feb 16
• 1782 citations
  Immunological memory to SARS-CoV-2 assessed for up to 8 months after infection.
  Jennifer M. Dan, Jose Mateus, Yu Kato, Kathryn M. Hastie, Esther Dawen Yu, Caterina E. Faliti, Alba Grifoni, Sydney I. Ramirez, Sonya Haupt, April Frazier, Catherine N...> ;Science. 2021 Feb 5
• 58 citations
  Immunological memory to SARS-CoV-2 assessed for up to eight months after infection.
  Jennifer M Dan, Jose Mateus, Yu Kato, Kathryn M Hastie, Esther Dawen Yu, Caterina E Faliti, Alba Grifoni, Sydney I Ramirez, Sonya Haupt, April Frazier, Catherine Nakao...> ;Biorxiv. 2020 Dec 18
• 183 citations
  Comprehensive analysis of T cell immunodominance and immunoprevalence of SARS-CoV-2 epitopes in COVID-19 cases
  Alison Tarke, John Sidney, Conner K. Kidd, Jennifer M. Dan, Sydney I. Ramirez, Esther Dawen Yu, Jose Mateus, Ricardo da Silva Antunes, Erin Moore, Paul Rubiro, Nils Me...> ;Biorxiv. 2020 Dec 9
• 1216 citations
  Antigen-Specific Adaptive Immunity to SARS-CoV-2 in Acute COVID-19 and Associations with Age and Disease Severity.
  Carolyn Rydyznski Moderbacher, Sydney I. Ramirez, Jennifer M. Dan, Alba Grifoni, Kathryn M. Hastie, Daniela Weiskopf, Simon Bélanger, Robert K. Abbott, Christina K. Ki...> ;Cell. 2020 Nov 12
• 15 citations
  AI-guided discovery of the invariant host response to viral pandemics
  Debashis Sahoo, Gajanan D. Katkar, Soni Khandelwal, Mahdi Behroozikhah, Amanraj Claire, Vanessa Castillo, Courtney Tindle, MacKenzie Fuller, Sahar Taheri, Thomas F. Ro...> ;Biorxiv. 2020 Sep 22
• 1013 citations
  Isolation of potent SARS-CoV-2 neutralizing antibodies and protection from disease in a small animal model.
  Thomas F. Rogers, Fangzhu Zhao, Deli Huang, Nathan Beutler, Alison Burns, Wan-ting He, Oliver Limbo, Chloe Smith, Ge Song, Jordan L. Woehl, Linlin Yang, Robert K. Abbo...> ;Science. 2020 Aug 21
• 791 citations
  Selective and cross-reactive SARS-CoV-2 T cell epitopes in unexposed humans.
  Jose Mateus, Alba Grifoni, Alison Tarke, John Sidney, Sydney I. Ramirez, Jennifer M. Dan, Zoe C Burger, Stephen A. Rawlings, Davey M. Smith, Elizabeth J. Phillips, Sim...> ;Science. 2020 Oct 2
• 8 citations
  Post-transplant survey to assess patient experiences with donor-derived HCV infection.
  Katya Prakash, Claudia Ramirez-Sanchez, Sydney I. Ramirez, Cathy Logan, Nancy Law, Kristin L. Mekeel, Victor Pretorius, Saima Aslam> ;Transplant Infectious Disease. 2020 Jul 23
• 2536 citations
  Targets of T Cell Responses to SARS-CoV-2 Coronavirus in Humans with COVID-19 Disease and Unexposed Individuals.
  Alba Grifoni, Daniela Weiskopf, Sydney I. Ramirez, Jose Mateus, Jennifer M. Dan, Carolyn Rydyznski Moderbacher, Stephen A. Rawlings, Aaron Sutherland, Lakshmanane Prem...> ;Cell. 2020 Jun 25
• 10 citations
  Mechanistic Insight into the Host Transcription Inhibition Function of Rift Valley Fever Virus NSs and Its Importance in Virulence
  Kaori Terasaki, Sydney I. Ramirez, Shinji Makino> ;Plos Neglected Tropical Diseases. 2016 Oct 6
• 110 citations
  Middle East Respiratory Syndrome Coronavirus nsp1 Inhibits Host Gene Expression by Selectively Targeting mRNAs Transcribed in the Nucleus while Sparing mRNAs of Cytopl...
  Kumari G. Lokugamage, Krishna Narayanan, Keisuke Nakagawa, Kaori Terasaki, Sydney I. Ramirez, Chien Te K. Tseng, Shinji Makino> ;Journal of Virology. 2015 Nov 1
• 130 citations
  Coronavirus nonstructural protein 1: Common and distinct functions in the regulation of host and viral gene expression
  Krishna Narayanan, Sydney I. Ramirez, Kumari G. Lokugamage, Shinji Makino> ;Virus Research. 2015 Apr 16
• 16 citations
  Development of a novel, single-cycle replicable rift valley Fever vaccine.
  Shin Murakami, Kaori Terasaki, Sydney I. Ramirez, John C. Morrill, Shinji Makino> ;Plos Neglected Tropical Diseases. 2014 Mar 20
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