YasharSharifiNiknafsMD

PubMed

• 21 citations
  Use of the MyProstateScore Test to Rule Out Clinically Significant Cancer: Validation of a Straightforward Clinical Testing Approach.
  Jeffrey J. Tosoian, Bruce J. Trock, Todd M. Morgan, Simpa S. Salami, Scott A. Tomlins, Daniel E. Spratt, Javed Siddiqui, Lakshmi P. Kunju, Rachel Botbyl, Zoey Chopra, ...> ;The Journal of Urology. 2021 Mar 1
• 2 citations
  Impact of the MyProstateScore (MPS) Test on the Clinical Decision to Undergo Prostate Biopsy: Results From a Contemporary Academic Practice.
  Amir H. Lebastchi, Christopher M. Russell, Yashar S. Niknafs, Nicholas W. Eyrich, Zoey Chopra, Rachel Botbyl, Rana Kabeer, Takahiro Osawa, Javed Siddiqui, Rabia Siddiq...> ;Urology. 2020 Nov 1
• 33 citations
  The role of the histone H3 variant CENPA in prostate cancer
  Anjan K. Saha, Rafael Contreras-Galindo, Yashar S. Niknafs, Matthew K. Iyer, Tingting Qin, Karthik R. Padmanabhan, Javed Siddiqui, Monica Palande, Claire L. Wang, Bria...> ;The Journal of Biological Chemistry. 2020 Jun 19
• 95 citations
  Regulation of heterotopic ossification by monocytes in a mouse model of aberrant wound healing
  Michael Sorkin, Amanda K. Huber, Charles Hwang, William F. Carson, Rajasree Menon, John Li, Kaetlin Vasquez, Chase A. Pagani, Nicole Patel, Shuli Li, Noelle D. Visser,...> ;Nature Communications. 2020 Feb 5
• 42 citations
  TTK inhibition radiosensitizes basal-like breast cancer through impaired homologous recombination.
  Benjamin C. Chandler, Leah Moubadder, Cassandra L. Ritter, Meilan Liu, Meleah Cameron, Kari Wilder-Romans, Amanda Zhang, Andrea M. Pesch, Anna R. Michmerhuizen, Nicole...> ;The Journal of Clinical Investigation. 2020 Feb 3
• 9 citations
  Early Notch Signals Induce a Pathogenic Molecular Signature during Priming of Alloantigen-Specific Conventional CD4+ T Cells in Graft-versus-Host Disease.
  Jooho Chung, Vedran Radojcic, Eric Perkey, Timothy J. Parnell, Yashar S. Niknafs, Xi Jin, Ann Friedman, Nathalie Labrecque, Bruce R. Blazar, Todd V. Brennan, Christian...> ;Journal of Immunology. 2019 Jul 15
• 8 citations
  Coordinating Tissue Regeneration Through Transforming Growth Factor-β Activated Kinase 1 Inactivation and Reactivation.
  Hsiao Hsin Sung Hsieh, Shailesh Agarwal, David Cholok, Shawn Loder, Kieko Kaneko, Amanda K. Huber, Michael T. Chung, Kavitha Ranganathan, Joe Habbouche, John Li, Jonat...> ;Stem Cells. 2019 Jun 1
• 10 citations
  The DEK Oncoprotein Functions in Ovarian Cancer Growth and Survival.
  Kari E. Hacker, Danielle E. Bolland, Lijun Tan, Anjan K. Saha, Yashar S. Niknafs, David M. Markovitz, Karen McLean> ;Neoplasia. 2018 Dec 1
• 17 citations
  MiPanda: A Resource for Analyzing and Visualizing Next-Generation Sequencing Transcriptomics Data.
  Yashar S. Niknafs, Balaji Pandian, Tilak Gajjar, Zach Gaudette, Kevin Wheelock, Mitra P. Maz, Rohan K. Achar, Melinda Song, Cory Massaro, Xuhong Cao, Arul M. Chinnaiyan> ;Neoplasia. 2018 Sep 27
• 35 citations
  MechRNA: prediction of lncRNA mechanisms from RNA-RNA and RNA-protein interactions.
  Alexander R. Gawronski, Michael Uhl, Yajia Zhang, Yen-Yi Lin, Yashar S. Niknafs, Varune Rohan Ramnarine, Rohit Malik, Felix Y. Feng, Arul M. Chinnaiyan, Colin Collins,...> ;Bioinformatics. 2018 Sep 15
• 174 citations
  Oncogenic Role of THOR, a Conserved Cancer/Testis Long Non-coding RNA
  Yasuyuki Hosono, Yashar S. Niknafs, John R. Prensner, Matthew K. Iyer, Saravana M. Dhanasekaran, Rohit Mehra, Sethuramasundaram Pitchiaya, Jean Tien, June Escara-Wilke...> ;Cell. 2017 Dec 14
• 29 citations
  Multigene Profiling of CTCs in mCRPC Identifies a Clinically Relevant Prognostic Signature.
  Udit Singhal, Yugang Wang, James Henderson, Yashar S. Niknafs, Yuanyuan Qiao, Amy Gursky, Alexander Zaslavsky, Jae Seung Chung, David Smith, R. Jeffrey Karnes, S. Laur...> ;Molecular Cancer Research. 2018 Apr 1
• 40 citations
  Strategic Targeting of Multiple BMP Receptors Prevents Trauma-Induced Heterotopic Ossification
  Shailesh Agarwal, Shawn Loder, Christopher Breuler, John Li, David Cholok, Cameron Brownley, Jonathan R. Peterson, Hsiao H. Hsieh, James Drake, Kavitha Ranganathan, Ya...> ;Molecular Therapy. 2017 Aug 2
• 65 citations
  Rapid Intraoperative Diagnosis of Pediatric Brain Tumors Using Stimulated Raman Histology.
  Todd C. Hollon, Spencer Lewis, Balaji Pandian, Yashar S. Niknafs, Mia Garrard, Hugh J. L. Garton, Cormac O. Maher, Kathryn McFadden, Matija Snuderl, Andrew P. Lieberma...> ;Cancer Research. 2018 Jan 1
• 35 citations
  A Critical Analysis of the Role of SNARE Protein SEC22B in Antigen Cross-Presentation
  S. Julia Wu, Yashar S. Niknafs, Stephanie Kim, Katherine Oravecz-Wilson, Cynthia Zajac, Tomomi Toubai, Yaping Sun, Jayendra Prasad, Daniel Peltier, Hideaki Fujiwara, I...> ;Cell Reports. 2017 Jun 27
• 251 citations
  Rapid intraoperative histology of unprocessed surgical specimens via fibre-laser-based stimulated Raman scattering microscopy.
  Daniel A. Orringer, Balaji Pandian, Yashar S. Niknafs, Todd C. Hollon, Julianne Boyle, Spencer Lewis, Mia Garrard, Shawn L. Hervey-Jumper, Hugh J. L. Garton, Cormac O....> ;Nature Biomedical Engineering. 2017 Feb 6
• 105 citations
  TACO produces robust multisample transcriptome assemblies from RNA-seq.
  Yashar S. Niknafs, Balaji Pandian, Hariharan K. Iyer, Arul M. Chinnaiyan, Matthew K. Iyer> ;Nature Methods. 2017 Jan 1
• 44 citations
  EGFL6 Regulates the Asymmetric Division, Maintenance, and Metastasis of ALDH+ Ovarian Cancer Cells
  Shoumei Bai, Patrick Ingram, Yu Chih Chen, Ning Deng, Alexander T. Pearson, Yashar S. Niknafs, Patrick O'Hayer, Yun Wang, Zhong Yin Zhang, Elisa Boscolo, Joyce Bischof...> ;Cancer Research. 2016 Nov 1
• 176 citations
  The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression
  Yashar S. Niknafs, Sumin Han, Teng Ma, Corey Speers, Chao Zhang, Kari Wilder-Romans, Matthew K. Iyer, Sethuramasundaram Pitchiaya, Rohit Malik, Yasuyuki Hosono, John R...> ;Nature Communications. 2016 Sep 26
• 39 citations
  Identification and Validation of PCAT14 as Prognostic Biomarker in Prostate Cancer
  Sudhanshu Shukla, Xiang Zhang, Yashar S. Niknafs, Lanbo Xiao, Rohit Mehra, Marcin Cieślik, Ashley E. Ross, Edward M. Schaeffer, Bhavna Malik, Shuling Guo, Susan M. Fre...> ;Neoplasia. 2016 Aug 1
• 8 citations
  High-throughput transcriptomic analysis nominates proteasomal genes as age-specific biomarkers and therapeutic targets in prostate cancer
  Shuang G. Zhao, William C. Jackson, Vishal Kothari, Matthew J. Schipper, Nicholas Erho, Joseph R. Evans, Corey Speers, Daniel A. Hamstra, Yashar S. Niknafs, Paul L. Ng...> ;Prostate Cancer and Prostatic Diseases. 2015 May 19
• 139 citations
  Targeting the MLL complex in castration-resistant prostate cancer.
  Rohit Malik, Amjad Khan, Irfan A. Asangani, Marcin Cieślik, John R. Prensner, Xiaoju Wang, Matthew K. Iyer, Xia Jiang, Dmitry Borkin, June Escara-Wilke, Rachell Stende...> ;Nature Medicine. 2015 Apr 1
• 1977 citations
  The landscape of long noncoding RNAs in the human transcriptome
  Matthew K. Iyer, Yashar S. Niknafs, Rohit Malik, Udit Singhal, Anirban Sahu, Yasuyuki Hosono, Terrence R. Barrette, John R. Prensner, Joseph R. Evans, Shuang G. Zhao, ...> ;Nature Genetics. 2015 Mar 1
• 108 citations
  The lncRNA PCAT29 inhibits oncogenic phenotypes in prostate cancer.
  Rohit Malik, Lalit Patel, John R. Prensner, Yang Shi, Matthew K. Iyer, Shruthi Subramaniyan, Alexander Carley, Yashar S. Niknafs, Anirban Sahu, Sumin Han, Teng Ma, Mei...> ;Molecular Cancer Research. 2014 Aug 1
• 5 citations
  RNA Identity Crisis: Hepatitis B Walks the LINE
  Yashar S. Niknafs, Arul M. Chinnaiyan> ;Cancer Cell. 2014 Mar 17
• Join now to see all