DanielMBatesMD

PubMed

• 154 citations
  Global reference mapping of human transcription factor footprints.
  Jeff Vierstra, John Lazar, Richard Sandstrom, Jessica Halow, Kristen Lee, Daniel Bates, Morgan Diegel, Douglas Dunn, Fidencio Neri, Eric Haugen, Eric Rynes, Alex Reyno...> ;Nature. 2020 Jul 29
• 133 citations
  Index and biological spectrum of human DNase I hypersensitive sites
  Wouter Meuleman, Alexander L. Muratov, Eric Rynes, Jessica Halow, Kristen Lee, Daniel Bates, Morgan Diegel, Douglas Dunn, Fidencio Neri, Athanasios Teodosiadis, Alex R...> ;Nature. 2020 Jul 29
• 17 citations
  Integrated Functional Genomic Analysis Enables Annotation of Kidney Genome-Wide Association Study Loci.
  Karsten B. Sieber, Anna Batorsky, Kyle Siebenthall, Kelly L. Hudkins, Jeff Vierstra, Shawn Sullivan, Aakash Sur, Michelle McNulty, Richard Sandstrom, Alex Reynolds, Da...> ;Journal of the American Society of Nephrology. 2019 Feb 13
• 24 citations
  Integrated epigenomic profiling reveals endogenous retrovirus reactivation in renal cell carcinoma.
  Kyle Siebenthall, Chris P. Miller, Jeff Vierstra, Julie Mathieu, Maria S. Tretiakova, Alex Reynolds, Richard Sandstrom, Eric Rynes, Eric Haugen, Audra K. Johnson, J. K...> ;Ebiomedicine. 2019 Mar 1
• 537 citations
  Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics.
  Alvaro N. Barbeira, Scott P. Dickinson, Rodrigo Bonazzola, Jiamao Zheng, Heather E. Wheeler, Jason M. Torres, Eric S. Torstenson, Kaanan P. Shah, Tzintzuni Garcia, Tod...> ;Nature Communications. 2018 May 8
• 100 citations
  Co-expression networks reveal the tissue-specific regulation of transcription and splicing
  Ashis Saha, Yungil Kim, Ariel D. H. Gewirtz, Brian Jo, Chuan Gao, Ian C. McDowell, Barbara E. Engelhardt, Alexis Battle, François Aguet, Kristin G. Ardlie, Beryl B. Cu...> ;Genome Research. 2017 Oct 11
• 1130 citations
  A comparative encyclopedia of DNA elements in the mouse genome
  Feng Yue, Yong Cheng, Alessandra Breschi, Jeff Vierstra, Weisheng Wu, Tyrone Ryba, Richard Sandstrom, Zhihai Ma, Carrie A. Davis, Benjamin D. Pope, Yin Shen, Dmitri D....> ;Nature. 2014 Nov 20
• 159 citations
  Conservation of trans-acting circuitry during mammalian regulatory evolution
  Andrew B. Stergachis, Shane Neph, Richard Sandstrom, Eric Haugen, Alex Reynolds, Miaohua Zhang, Rachel Byron, Theresa K. Canfield, Sandra Stelhing-Sun, Kristen Lee, Ro...> ;Nature. 2014 Nov 20
• 185 citations
  Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
  Jeff Vierstra, Eric Rynes, Richard Sandstrom, Miaohua Zhang, Theresa K. Canfield, R. Scott Hansen, Sandra Stehling-Sun, Peter J. Sabo, Rachel Byron, Richard Humbert, R...> ;Science. 2014 Nov 21
• 2374 citations
  Systematic localization of common disease-associated variation in regulatory DNA.
  Matthew T. Maurano, Richard Humbert, Eric Rynes, Robert E. Thurman, Eric Haugen, Hao Wang, Alex Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer A. Brody, Anthony Sha...> ;Science. 2012 Sep 7
• 563 citations
  An expansive human regulatory lexicon encoded in transcription factor footprints
  Shane Neph, Jeff Vierstra, Andrew B. Stergachis, Alex Reynolds, Eric Haugen, Benjamin Vernot, Robert E. Thurman, Sam John, Richard Sandstrom, Audra K. Johnson, Matthew...> ;Nature. 2012 Sep 6
• 1881 citations
  The accessible chromatin landscape of the human genome
  Robert E. Thurman, Eric Rynes, Richard Humbert, Jeff Vierstra, Matthew T. Maurano, Eric Haugen, Nathan C. Sheffield, Andrew B. Stergachis, Hao Wang, Benjamin Vernot, K...> ;Nature. 2012 Sep 6
• 108 citations
  Mutations in 3 genes (MKS3, CC2D2A and RPGRIP1L) cause COACH syndrome (Joubert syndrome with congenital hepatic fibrosis)
  , , , , , , , , , , , , , , , , , , , , , > ;Journal of Medical Genetics. 2010 Jan 1
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