DonaldJosephJohannMD

PubMed

• Effect of Antigen Retrieval on Genomic DNA From Immunodissected Samples.
  Donald J Johann, Ik Jae Shin, Adam Roberge, Sarah Laun, Erich A Peterson, Meei Liu, Matthew A Steliga, Jason Muesse, Michael R Emmert-Buck, Michael A Tangrea> ;The Journal of Histochemistry and Cytochemistry. 2022 Sep 1
• An advanced molecular medicine case report of a rare human tumor using genomics, pathomics, and radiomics.
  Li Ma, Erich A Peterson, Ik Jae Shin, Jason Muesse, Katy Marino, Mathew A Steliga, Omar Atiq, Konstantinos Arnaoutakis, Christopher Wardell, Jacob Wooldridge, Fred Pri...> ;Frontiers in Genetics. 2022 Jan 1
• 8 citations
  Exogenous phosphatidic acid reduces acetaminophen-induced liver injury in mice by activating hepatic interleukin-6 signaling through inter-organ crosstalk
  Melissa M. Clemens, Stefanie Kennon-McGill, Joel H. Vazquez, Owen W. Stephens, Erich A. Peterson, Donald J. Johann, Felicia D. Allard, Eric U. Yee, Sandra S. McCulloug...> ;Acta Pharmaceutica Sinica. B. 2021 Aug 26
• 17 citations
  Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.
  Binsheng Gong, Dan Li, Rebecca Kusko, Natalia Novoradovskaya, Yifan Zhang, Shangzi Wang, Carlos Pabón-Peña, Zhihong Zhang, Kevin Lai, Wanshi Cai, Jennifer S. LoCoco, E...> ;Genome Biology. 2021 Apr 16
• 20 citations
  A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency
  Wendell D. Jones, Binsheng Gong, Natalia Novoradovskaya, Dan Li, Rebecca Kusko, Todd Richmond, Donald J. Johann, Halil Bisgin, Sayed Mohammad Ebrahim Sahraeian, Pierre...> ;Genome Biology. 2021 Apr 16
• 101 citations
  Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
  Ira W. Deveson, Binsheng Gong, Kevin Lai, Jennifer S. LoCoco, Todd Richmond, Jeoffrey Schageman, Zhihong Zhang, Natalia Novoradovskaya, James C. Willey, Wendell D. Jon...> ;Nature Biotechnology. 2021 Apr 12
• 8 citations
  BloodPAC Data Commons for Liquid Biopsy Data
  Robert L. Grossman, Jonathan R Dry, Sean E. Hanlon, Donald J. Johann, Anand Kolatkar, Jerry S.H. Lee, Christopher Meyer, Lea M. Salvatore, Walt Wells, Lauren C. Leiman> ;JCO Clinical Cancer Informatics. 2021 Apr 30
• 1 citations
  NPARS-A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science.
  Li Ma, Erich A. Peterson, Ik Jae Shin, Jason L. Muesse, Katy Marino, Matthew A. Steliga, Donald J. Johann> ;Frontiers in Big Data. 2021 Jan 1
• 5 citations
  Expansion of Human Papillomavirus-Specific T Cells in Periphery and Cervix in a Therapeutic Vaccine Recipient Whose Cervical High-Grade Squamous Intraepithelial Lesion...
  Takeo Shibata, Sumit K. Shah, Teresa Evans, Hannah N. Coleman, Benjamin J. Lieblong, Horace J. Spencer, Charles M. Quick, Toshiyuki Sasagawa, Owen W. Stephens, Erich A...> ;Frontiers in Immunology. 2021 Sep 30
• 41 citations
  Generic Protocols for the Analytical Validation of Next-Generation Sequencing-Based ctDNA Assays: A Joint Consensus Recommendation of the BloodPAC's Analytical Variabl...
  James H Godsey, Angela Silvestro, J. Carl Barrett, Kelli Bramlett, Darya Chudova, Ina L. Deras, Jennifer S Dickey, James W. Hicks, Donald J Johann, Rebecca Leary, Jerr...> ;Clinical Chemistry. 2020 Sep 1
• 3 citations
  Sustained fetal hematopoiesis causes juvenile death from leukemia: evidence from a dual-age–specific mouse model
  Nitza Vara, Yuqing Liu, Yan Yan, Shelly Lensing, Natalia Colorado, Delli Robinson, Jingliao Zhang, Xin Zhang, Erich A. Peterson, Nicholas J. Baltz, Daohong Zhou, Alice...> ;Blood Advances. 2020 Aug 11
• 4 citations
  Direct molecular dissection of tumor parenchyma from tumor stroma in tumor xenograft using mass spectrometry-based glycoproteomics.
  Xiaoying Ye, Brian T. Luke, Bih-Rong Wei, Jan A. Kaczmarczyk, Jadranka Loncarek, Jennifer E. Dwyer, Donald J. Johann, Richard G. Saul, Dwight V. Nissley, Frank McCormi...> ;Oncotarget. 2018 May 29
• 31 citations
  Liquid biopsy and its role in an advanced clinical trial for lung cancer.
  Donald J. Johann, Mathew Steliga, Ik Jae Shin, Donghoon Yoon, Konstantinos Arnaoutakis, Laura F. Hutchins, Meeiyueh Liu, Jason Liem, Karl Walker, Andy Pereira, Mary Ya...> ;Experimental Biology and Medicine. 2018 Feb 6
• 2 citations
  Protocol for the Analysis of Laser Capture Microdissected Fresh-Frozen Tissue Homogenates by Silver-Stained 1D SDS-PAGE.
  DaRue A. Prieto, Gordon Whitely, Donald J. Johann, Josip Blonder> ;Methods in Molecular Biology. 2018 Jan 1
• 8 citations
  Computer-Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools.
  Jason D. Hipp, Donald J. Johann, Yun Chen, Anant Madabhushi, James Monaco, Jerome Cheng, Jaime Rodriguez-Canales, Martin C. Stumpe, Greg Riedlinger, Avi Z. Rosenberg, ...> ;Journal of Pathology Informatics. 2018 Jan 1
• 3 citations
  Preparation and Immunoaffinity Depletion of Fresh Frozen Tissue Homogenates for Mass Spectrometry-Based Proteomics in the Context of Drug Target/Biomarker Discovery.
  DaRue A. Prieto, King C. Chan, Donald J. Johann, Xiaoying Ye, Gordon Whitely, Josip Blonder> ;Methods in Molecular Biology. 2017 Jan 1
• 1 citations
  Proceedings of the 2015 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
  Jonathan D. Wren, Shraddha Thakkar, Ramin Homayouni, Donald J. Johann, Mikhail G. Dozmorov> ;BMC Bioinformatics. 2015 Sep 25
• 8 citations
  Enhancing cancer clonality analysis with integrative genomics
  Erich A. Peterson, Michael A Bauer, Shweta S. Chavan, Cody Ashby, Niels Weinhold, Christoph Heuck, Gareth J. Morgan, Donald J. Johann> ;BMC Bioinformatics. 2015 Sep 25
• 35 citations
  Evidence of an epigenetic origin for high-risk 1q21 copy number aberrations in multiple myeloma
  Jeffrey R. Sawyer, Erming Tian, Christoph Heuck, Donald J. Johann, Joshua Epstein, Charles M. Swanson, Janet L. Lukacs, Regina Lichti Binz, Marian Johnson, Gael Sammar...> ;Blood. 2014 Dec 6
• 5 citations
  Revealing the inherent heterogeneity of human malignancies by variant consensus strategies coupled with cancer clonal analysis
  Erich A. Peterson, Shweta S. Chavan, Michael A Bauer, Christoph Heuck, Donald J. Johann> ;BMC Bioinformatics. 2014 Oct 21
• 2 citations
  Leveraging the new with the old: providing a framework for the integration of historic microarray studies with next generation sequencing
  Michael A Bauer, Shweta S. Chavan, Erich A. Peterson, Christoph Heuck, Donald J. Johann> ;BMC Bioinformatics. 2014 Oct 21
• 39 citations
  Patterns of Central Nervous System Involvement in Relapsed and Refractory Multiple Myeloma
  Al-Ola Abdallah, Shebli Atrash, Zainab Shahid, Muzaffar Jameel, Monica Grazziutti, Senu Apewokin, Naveen Sanath Kumar, Alejandro Restrepo, Sarah Waheed, Frits van Rhee...> ;Clinical Lymphoma, Myeloma & Leukemia. 2014 Jun 1
• 38 citations
  Jumping translocations of 1q12 in multiple myeloma: a novel mechanism for deletion of 17p in cytogenetically defined high-risk disease
  Jeffrey R. Sawyer, Erming Tian, Christoph Heuck, Joshua Epstein, Donald J. Johann, Charles M. Swanson, Janet L. Lukacs, Marian Johnson, Regina Lichti Binz, Angela Boas...> ;Blood. 2014 Apr 17
• 24 citations
  Mass spectrometry in cancer biomarker research: a case for immunodepletion of abundant blood-derived proteins from clinical tissue specimens.
  DaRue A. Prieto, Donald J. Johann, Bih Rong Wei, Xiaoying Ye, King C. Chan, Dwight V. Nissley, R. Mark Simpson, Deborah Citrin, Crystal L. Mackall, W. Marston Linehan,...> ;Biomarkers in Medicine. 2014 Feb 12
• 12 citations
  Towards the integration, annotation and association of historical microarray experiments with RNA-seq.
  Shweta S. Chavan, Michael A Bauer, Erich A. Peterson, Christoph Heuck, Donald J. Johann> ;BMC Bioinformatics. 2013 Oct 9
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