EllenLiMD

PubMed

• Metagenomic and bile acid metabolomic analysis of fecal microbiota transplantation for recurrent Clostridiodes difficile and/or inflammatory bowel diseases.
  Rubin Jf Ramos, Chencan Zhu, Dimitri F Joseph, Shubh Thaker, Joseph F Lacomb, Katherine Markarian, Hannah J Lee, Jessica C Petrov, Farah Monzur, Jonathan M Buscaglia, ...> ;Medical research archives. 2022 Oct 31
• Impact of type 2 diabetes on adenoma detection in screening colonoscopies performed in disparate populations
  Dimitri Joseph, Ellen Li, Samuel L. Stanley, Yi-Cong Zhu, Xiao-Ning Li, Jie Yang, Lorenzo F. Ottaviano, Juan Carlos Bucobo, Jonathan M. Buscaglia, Joshua D. Miller, Ra...> ;World Journal of Clinical Cases. 2021 Apr 16
• 1 citations
  Impact of preoperative antibiotics and other variables on integrated microbiome-host transcriptomic data generated from colorectal cancer resections.
  Sarah A Malik, Chencan Zhu, Jinyu Li, Joseph F. LaComb, Paula Denoya, Igor Kravets, Joshua D. Miller, Jie Yang, Melissa Kramer, W. Richard McCombie, Charles E. Roberts...> ;World Journal of Gastroenterology. 2021 Apr 14
• 2 citations
  Whole-genome sequencing of African Americans implicates differential genetic architecture in inflammatory bowel disease.
  Hari K. Somineni, Sini Nagpal, Suresh Venkateswaran, David J. Cutler, David T. Okou, Talin Haritunians, Claire L. Simpson, Ferdouse Begum, Lisa W. Datta, Antonio Quiro...> ;American Journal of Human Genetics. 2021 Mar 4
• 7 citations
  Type 2 diabetes impacts colorectal adenoma detection in screening colonoscopy.
  Lorenzo F. Ottaviano, Xueying Li, Matthew Murray, Jesse T. Frye, Brandon E. Lung, Ying Yi Zhang, Jie Yang, Erin Taub, Juan Carlos Bucobo, Jonathan M. Buscaglia, Ellen ...> ;Scientific Reports. 2020 May 8
• 7 citations
  Single-Pass vs 2-Pass Endoscopic Ultrasound-Guided Fine-Needle Biopsy Sample Collection for Creation of Pancreatic Adenocarcinoma Organoids.
  Joseph F. LaComb, Dennis Plenker, Hervé Tiriac, Juan Carlos Bucobo, Lionel S. D’Souza, Asim Khokhar, Hardik Patel, Breana Channer, Dimitri Joseph, Maoxin Wu, David A. ...> ;Clinical Gastroenterology and Hepatology. 2021 Apr 1
• 27 citations
  Oncogenic KRAS Reduces Expression of FGF21 in Acinar Cells to Promote Pancreatic Tumorigenesis in Mice on a High-Fat Diet.
  Yongde Luo, Yaying Yang, Muyun Liu, Dan Wang, Feng Wang, Yawei Bi, Juntao Ji, Suyun Li, Yan Liu, Rong Chen, Haojie Huang, Xiaojie Wang, Agnieszka Katarzyna Swidnicka-S...> ;Gastroenterology. 2019 Nov 1
• 7 citations
  Autoinflammatory disease with focus on NOD2-associated disease in the era of genomic medicine.
  Qingping Yao, Ellen Li, Bo Shen> ;Autoimmunity. 2019 May 13
• 4 citations
  Confounders in Adenoma Detection at Initial Screening Colonoscopy: A Factor in the Assessment of Racial Disparities as a Risk for Colon Cancer
  Yakira N. David, Lorenzo F. Ottaviano, Jihye Park, Sadat Iqbal, Michelle Likhtshteyn, Samir T Kumar, Helen Lyo, Ayanna E. Lewis, Brandon E. Lung, Jesse T. Frye, Li Hua...> ;Journal of Cancer Therapy. 2019 Apr 4
• 7 citations
  Influence of Crohn's disease related polymorphisms in innate immune function on ileal microbiome.
  Ellen Li, Yuanhao Zhang, Xinyu Tian, Xuefeng Wang, Grace Gathungu, Ashley Wolber, Shehzad S. Shiekh, R. Balfour Sartor, Nicholas O. Davidson, Matthew A. Ciorba, Wei Zh...> ;PLOS ONE. 2019 Feb 28
• 10 citations
  Obesogenic high-fat diet heightens aerobic glycolysis through hyperactivation of oncogenic KRAS
  Dan Wang, Yawei Bi, Lianghao Hu, Yongde Luo, Juntao Ji, Albert Z. Mao, Craig D. Logsdon, Ellen Li, James L. Abbruzzese, Zhao-Shen Li, Vincent W. Yang, Weiqin Lu> ;Cell Communication and Signaling. 2019 Feb 28
• 353 citations
  Organoid profiling identifies common responders to chemotherapy in pancreatic cancer
  Hervé Tiriac, Pascal Belleau, Dannielle D. Engle, Dennis Plenker, Astrid Deschênes, Tim D.D. Somerville, Fieke E. M. Froeling, Richard A. Burkhart, Robert E. Denroche,...> ;Cancer Discovery. 2018 May 31
• 9 citations
  Impaired granulocyte-macrophage colony-stimulating factor bioactivity accelerates surgical recurrence in ileal Crohn's disease.
  Grace Gathungu, Yuanhao Zhang, Xinyu Tian, Erin Bonkowski, Leahana Rowehl, Julia M. Krumsiek, Billy D. Nix, Claudia Chalk, Bruce C. Trapnell, Wei Zhu, Rodney D. Newber...> ;World Journal of Gastroenterology. 2018 Feb 7
• 15 citations
  Longitudinal microbiome analysis of single donor fecal microbiota transplantation in patients with recurrent Clostridium difficile infection and/or ulcerative colitis.
  Michael Mintz, Shanawaj Khair, Suman Grewal, Joseph F. LaComb, Jiyhe Park, Breana Channer, Ramona Rajapakse, Juan Carlos Bucobo, Jonathan M. Buscaglia, Farah Monzur, A...> ;PLOS ONE. 2018 Jan 31
• 75 citations
  Successful creation of pancreatic cancer organoids by means of EUS-guided fine-needle biopsy sampling for personalized cancer treatment.
  Hervé Tiriac, Juan Carlos Bucobo, Demetrios Tzimas, Suman Grewel, Joseph F. LaComb, Leahana Rowehl, Satish Nagula, Maoxin Wu, Joseph Kim, Aaron R. Sasson, Shivakumar V...> ;Gastrointestinal Endoscopy. 2017 May 1
• 75 citations
  Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease
  Steven R. Brant, David T. Okou, Claire L. Simpson, David J. Cutler, Talin Haritunians, Jonathan P. Bradfield, Pankaj Chopra, Jarod Prince, Ferdouse Begum, Archana Kuma...> ;Gastroenterology. 2017 Jan 1
• 1 citations
  Correction: Aberrant DNA Methylation: Implications in Racial Health Disparity.
  Xuefeng Wang, Ping Ji, Yuanhao Zhang, Joseph F. LaComb, Xinyu Tian, Ellen Li, Jennie L. Williams> ;PLOS ONE. 2016 Jun 21
• 22 citations
  Aberrant DNA Methylation: Implications in Racial Health Disparity.
  Xuefeng Wang, Ping Ji, Yuanhao Zhang, Joseph F. LaComb, Xinyu Tian, Ellen Li, Jennie L. Williams> ;PLOS ONE. 2016 Apr 25
• 113 citations
  Comparison of Fecal Microbiota in Children with Autism Spectrum Disorders and Neurotypical Siblings in the Simons Simplex Collection
  Joshua S. Son, Ling J. Zheng, Leahana Rowehl, Xinyu Tian, Yuanhao Zhang, Wei Zhu, Leighann Litcher-Kelly, Kenneth D. Gadow, Grace Gathungu, Charles E. Robertson, Diana...> ;PLOS ONE. 2015 Oct 1
• 6 citations
  Erratum: IDO1 and IDO2 non-synonymous gene variants: Correlation with Crohn's disease risk and clinical phenotype (PLoS ONE (2015) 10:7 (e0133098))
  Alexander Lee, Navya D. Kanuri, Yuanhao Zhang, Greg Sayuk, Ellen Li, Matthew A. Ciorba> ;PLOS ONE. 2015 Jul 14
• 120 citations
  miR-181a-5p Inhibits Cancer Cell Migration and Angiogenesis via Downregulation of Matrix Metalloproteinase-14
  Yiyi Li, Cem Kuscu, Anna Banach, Qian Zhang, Ashleigh Pulkoski-Gross, Deborah Kim, Jingxuan Liu, Eric Roth, Ellen Li, Kenneth R. Shroyer, Paula Denoya, Xiaoxia Zhu, Lo...> ;Cancer Research. 2015 Jul 1
• 33 citations
  Altered Interactions between the Gut Microbiome and Colonic Mucosa Precede Polyposis in APCMin/+ Mice
  Joshua S. Son, Shanawaj Khair, Donald W. Pettet, Nengtai Ouyang, Xinyu Tian, Yuanhao Zhang, Wei Zhu, Gerardo G. Mackenzie, Charles E. Robertson, Diana Ir, Daniel N. Fr...> ;PLOS ONE. 2015 Jun 29
• 3 citations
  A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing
  Xuefeng Wang, Xiaoqing Yu, Wei Zhu, W. Richard McCombie, Eric Antoniou, R. Scott Powers, Nicholas O. Davidson, Ellen Li, Jennie L. Williams> ;Bioinformatics. 2015 Jun 15
• 40 citations
  Hypoxia promotes colon cancer dissemination through up-regulation of cell migration-inducing protein (CEMIP)
  Nikki A. Evensen, Yiyi Li, Cem Kuscu, Jingxuan Liu, Jillian Cathcart, Anna Banach, Qian Zhang, Ellen Li, Sonia Joshi, Jie Yang, Paula Denoya, Silvia Pastorekova, Stanl...> ;Oncotarget. 2015 May 15
• 4 citations
  Correction: Identification of candidate Adherent-Invasive E. Coli signature transcripts by genomic/transcriptomic analysis (PLoS ONE (2015) 10:7 (e0134759))
  Yuanhao Zhang, Leahana Rowehl, Julia M. Krumsiek, Erika P. Orner, Nurmohammad Shaikh, Phillip I. Tarr, Erica Sodergren, George M. Weinstock, Edgar C. Boedeker, Xuejian...> ;PLOS ONE. 2015 Jul 28
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Journal Articles

• Impaired Granulocyte-Macrophage Colony-Stimulating Factor Bioactivity Accelerates Surgical Recurrence in Ileal Crohn’s Disease  
  Rodney Newberry, Lee Denson, Grace Gathungu, Ellen Li, World Journal of Gastroenterology