JerryCaporasoJr.MD

PubMed

• Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota.
  Kang, D. W.,Adams, J. B.,Coleman, D. M.,Pollard, E. L.,Maldonado, J.,McDonough-Means, S.,Caporaso, J. G.,Krajmalnik-Brown, R.> ;Sci Rep. 2019 Apr 11
• Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its t...
  Stone, N. E.,Nunnally, A. E.,Jimenez, V.,Cope, E. K.,Sahl, J. W.,Sheridan, K.,Hornstra, H. M.,Vinocur, J.,Settles, E. W.,Headley, K. C.,Williamson, CHD.,Rideout, J. R....> ;Anaerobe. 2019 Apr 05
• Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles.
  Bokulich, N. A.,Maldonado, J.,Kang, D. W.,Krajmalnik-Brown, R.,Caporaso, J. G.> ;mSphere. 2019 Apr 12
• An Introduction to Applied Bioinformatics: a free, open, and interactive text.
  Bolyen, E.,Rideout, J. R.,Chase, J.,Pitman, T. A.,Shiffer, A.,Mercurio, W.,Dillon, M. R.,Caporaso, J. G.> ;J Open Source Educ. 2019 Jan 29
• Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development.
  Pearson, T.,Caporaso, J. G.,Yellowhair, M.,Bokulich, N. A.,Padi, M.,Roe, D. J.,Wertheim, B. C.,Linhart, M.,Martinez, J. A.,Bilagody, C.,Hornstra, H.,Alberts, D. S.,Lan...> ;Cancer Med. 2019 Jan 18
• q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data.
  Bokulich, N. A.,Dillon, M. R.,Zhang, Y.,Rideout, J. R.,Bolyen, E.,Li, H.,Albert, P. S.,Caporaso, J. G.> ;mSystems. 2018 Dec 07
• Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-...
  Meisel, J. S.,Nasko, D. J.,Brubach, B.,Cepeda-Espinoza, V.,Chopyk, J.,Corrada-Bravo, H.,Fedarko, M.,Ghurye, J.,Javkar, K.,Olson, N. D.,Shah, N.,Allard, S. M.,Bazinet, ...> ;Microbiome. 2018 Nov 07
• Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017.
  Sinha, R.,Ahsan, H.,Blaser, M.,Caporaso, J. G.,Carmical, J. R.,Chan, A. T.,Fodor, A.,Gail, M. H.,Harris, C. C.,Helzlsouer, K.,Huttenhower, C.,Knight, R.,Kong, H. H.,La...> ;Microbiome. 2018 Nov 28
• Qiita: rapid, web-enabled microbiome meta-analysis.
  Gonzalez, A.,Navas-Molina, J. A.,Kosciolek, T.,McDonald, D.,Vázquez-Baeza, Y.,Ackermann, G.,DeReus, J.,Janssen, S.,Swafford, A. D.,Orchanian, S. B.,Sanders, J. G.,Shor...> ;Nat. Methods. 2018 Oct 03
• Species-level functional profiling of metagenomes and metatranscriptomes.
  Franzosa, E. A.,McIver, L. J.,Rahnavard, G.,Thompson, L. R.,Schirmer, M.,Weingart, G.,Lipson, K. S.,Knight, R.,Caporaso, J. G.,Segata, N.,Huttenhower, C.> ;Nat. Methods. 2018 Nov 01
• Current Understanding of the Human Microbiome
  Martin J Blaser, J Gregory Caporaso> ;Nature.
• Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing.
  Taylor DL, Walters WA, Lennon NJ, Bochicchio J, Krohn A, Caporaso JG, Pennanen T> ;Appl. Environ. Microbiol.. 2016-12-15
• Phylogenetic organization of bacterial activity.
  Morrissey EM, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, Hayer M, McHugh TA, Marks JC, Price LB, Hungate BA> ;ISME J. 2016-09-01
• Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.
  Rideout JR, Chase JH, Bolyen E, Ackermann G, González A, Knight R, Caporaso JG> ;Gigascience. 2016-06-13
• Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses.
  Fouquier J, Rideout JR, Bolyen E, Chase J, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST> ;Microbiome. 2016-02-24
• Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis.
  Laubitz D, Harrison CA, Midura-Kiela MT, Ramalingam R, Larmonier CB, Chase JH, Caporaso JG, Besselsen DG, Ghishan FK, Kiela PR> ;PLoS ONE. 2016-01-01
• Quantitative Microbial Ecology through Stable Isotope Probing.
  Hungate, B. A.,Mau, R. L.,Schwartz, E.,Caporaso, J. G.,Dijkstra, P.,van Gestel, N.,Koch, B. J.,Liu, C. M.,McHugh, T. A.,Marks, J. C.,Morrissey, E. M.,Price, L. B.> ;Appl. Environ. Microbiol.. 2015 Aug 25
• The Role of Curcumin in Modulating Colonic Microbiota During Colitis and Colon Cancer Prevention.
  McFadden RT, Larmonier CB, Shehab KW, Midura-Kiela M, Ramalingam R, Harrison CA, Besselsen DG, Chase JH, Caporaso JG, Jobin C, Ghishan FK, Kiela PR> ;Inflamm. Bowel Dis.. 2015-11-01
• From Rare to Dominant: A Fine-Tuned Soil Bacterial Bloom during Petroleum Hydrocarbon Bioremediation.
  Fuentes, S.,Barra, B.,Caporaso, J. G.,Seeger, M.> ;Appl. Environ. Microbiol.. 2015 Nov 22
• Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone.
  Kang, D. W.,DiBaise, J. K.,Ilhan, Z. E.,Crowell, M. D.,Rideout, J. R.,Caporaso, J. G.,Rittmann, B. E.,Krajmalnik-Brown, R.> ;Anaerobe. 2015 Jan 27
• Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.
  He Y, Caporaso JG, Jiang X, Sheng H, Huse SM, Rideout JR, Edgar RC, Kopylova E, Walters WA, Knight R, Zhou H> ;Microbiome. 2015-01-01
• Erratum to: Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity.
  He Y, Caporaso JG, Jiang X, Sheng H, Huse SM, Rideout JR, Edgar RC, Kopylova E, Walters WA, Knight R, Zhou H> ;Microbiome. 2015-01-01
• Temporal variability is a personalized feature of the human microbiome.
  Flores GE, Caporaso JG, Henley JB, Rideout JR, Domogala D, Chase J, Leff JW, Vázquez-Baeza Y, Gonzalez A, Knight R, Dunn RR, Fierer N> ;Genome Biol.. 2014-12-03
• Advancing the microbiome research community.
  Huttenhower, C.,Knight, R.,Brown, C. T.,Caporaso, J. G.,Clemente, J. C.,Gevers, D.,Franzosa, E. A.,Kelley, S. T.,Knights, D.,Ley, R. E.,Mahurkar, A.,Ravel, J.,White, O.> ;Cell. 2014 Oct 11
• Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity.
  Bolnick, D. I.,Snowberg, L. K.,Caporaso, J. G.,Lauber, C.,Knight, R.,Stutz, W. E.> ;Mol. Ecol.. 2014 Jul 01
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Journal Articles

• Next Steps in Studying the Human Microbiome and Health in Prospective Studies, Bethesda, MD, May 16–17, 2017  
  J Gregory Caporaso, Martin Blaser, Michael J Orlich, Mitchell H Gail, Heidi H Kong, Andrew T Chan, Kathy Helzlsouer, BioMed Central