MidhatFarooqiMD

PubMed

• Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.
  Ayse Keskus, Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky, Ataberk Donmez, Lisa A Lansdon, Isabel Rodriguez, Jimin Park, Yuelin Liu, Xiwe...> ;Medrxiv. 2024 Mar 26
• Polypyrimidine Tract Binding Protein: A Universal Player in Cancer Development.
  Elizabeth Gonzalez, Terrie G Flatt, Midhat Farooqi, Lisa Johnson, Atif A Ahmed> ;Current Molecular Medicine. 2023 Oct 24
• 1 citations
  ROS1 Alterations as a Potential Driver of Gliomas in Infant, Pediatric, and Adult Patients.
  David M Meredith, Linda D Cooley, Adrian Dubuc, Jennifer Morrissette, Robyn T Sussman, MacLean P Nasrallah, Pamela Rathbun, Kai Lee Yap, Nitin Wadhwani, Liming Bao, Da...> ;Modern Pathology. 2023 Nov 1
• 1 citations
  Perinucleolar Compartment (PNC) Prevalence as an Independent Prognostic Factor in Pediatric Ewing Sarcoma: A Multi-Institutional Study.
  Elizabeth Gonzalez, Atif A Ahmed, Laura McCarthy, Katherine Chastain, Sahibu Habeebu, Marta Zapata-Tarres, Rocio Cardenas-Cardos, Liliana Velasco-Hidalgo, Celso Corcue...> ;Cancers. 2023 Apr 10
• 2 citations
  Integrated genetic profiling of archival pediatric high-grade glial tumors and reassessment with 2021 WHO classification of paediatric CNS tumours.
  Linda D Cooley, Lisa A Lansdon, Kris Laurence, John C Herriges, Lei Zhang, Elena A Repnikova, Julie Joyce, Preeti Thakor, Lisa Warren, Scott C Smith, Byunggil Yoo, Mel...> ;Cancer Genetics. 2023 Jun 1
• 1 citations
  Genetic heterogeneity and enrichment of variants in DNA-repair genes in ameloblastoma.
  Waheed Awotoye, Joseph Craig Whitt, Byunggil Yoo, Midhat S Farooqi, Emily G Farrow, Veerasathpurush Allareddy, Brad A Amendt, Shankar Rengasamy Venugopalan> ;Journal of Oral Pathology & Medicine. 2023 Mar 1
• Novel OncogenicVariant in Severe Infantile Myofibromatosis With Response to Imatinib Using Therapeutic Drug Monitoring.
  Abbey Elsbernd, Boutaina Boulouadnine, Atif Ahmed, Midhat Farooqi, Tracy Sandritter, Valentina Shakhnovich, Darius Blanding, Jean-Baptiste Demoulin, Joel Thompson> ;JCO Precision Oncology. 2022 Oct 1
• 3 citations
  Clinical Validation of Genome Reference Consortium Human Build 38 in a Laboratory Utilizing Next-Generation Sequencing Technologies.
  Lisa A Lansdon, Maxime Cadieux-Dion, John C Herriges, Jeffrey Johnston, Byunggil Yoo, Joseph T Alaimo, Isabelle Thiffault, Neil Miller, Ana S A Cohen, Elena A Repnikov...> ;Clinical Chemistry. 2022 Sep 1
• Chromosomal Microarray Reinterpretation: Applications to Pediatric Practice.
  Guanglu Shi, Jing Xu, Shirelle F Barnes, Midhat S Farooqi, Hung S Luu, Garrett Gotway, Jason Y Park> ;The Journal of Pediatrics. 2022 Apr 1
• 6 citations
  NanoString Digital Molecular Profiling of Protein and microRNA in Rhabdomyosarcoma.
  Atif A Ahmed, Midhat S Farooqi, Sultan S Habeebu, Elizabeth Gonzalez, Terrie G Flatt, Ashley L Wilson, Frederic G Barr> ;Cancers. 2022 Jan 21
• 3 citations
  Next-Generation Sequencing in the Diagnosis of Rare Pediatric Sinonasal Tumors.
  Atif A. Ahmed, Divya S Vundamati, Midhat S. Farooqi, Elena Repnikova, Timothy P. Zinkus, Maxine Hetherington, Lorien Paulson> ;Ear, Nose, & Throat Journal. 2021 Jun 1
• 11 citations
  Factors Affecting Migration to GRCh38 in Laboratories Performing Clinical Next-Generation Sequencing.
  Lisa A. Lansdon, Maxime Cadieux-Dion, Byunggil Yoo, Neil A. Miller, Ana S.A. Cohen, Lee Zellmer, Lei Zhang, Emily G. Farrow, Isabelle Thiffault, Elena Repnikova, Linda...> ;The Journal of Molecular Diagnostics. 2021 May 1
• 4 citations
  MYOD1 as a prognostic indicator in rhabdomyosarcoma
  Atif A. Ahmed, Sahibu Sultan M Habeebu, Midhat S. Farooqi, A S Gamis, Elizabeth Gonzalez, Terrie G Flatt, Ashley K. Sherman, Lea F. Surrey, Michael Arnold, Miriam R Co...> ;Pediatric Blood & Cancer. 2021 Apr 29
• 2 citations
  Polycythemia vera in a 2-year-old child with a JAK2 exon 12 deletion.
  Sarah Mc Dermott, Nicole Kucine, Midhat S. Farooqi, Weijie Li, Michael Silvey> ;Pediatric Blood & Cancer. 2021 Mar 4
• 2 citations
  Clinical Validation of Somatic Mutation Detection by the Oncoscan CNV Plus Assay
  Scott C. Smith, Midhat S. Farooqi, Melissa Gener, Kevin Ginn, Julie M. Joyce, Tara M. Bendorf, Linda D. Cooley> ;The Journal of Molecular Diagnostics. 2021 Jan 1
• 7 citations
  Near haploidization is a genomic hallmark which defines a molecular subgroup of giant cell glioblastoma.
  Tiffany G. Baker, Jay Alden, Adrian M. Dubuc, Cynthia T. Welsh, Iya Znoyko, Linda D. Cooley, Midhat S. Farooqi, Stuart Schwartz, Yvonne Y. Li, Andrew D. Cherniack, Sco...> ;Neuro-Oncology Advances. 2020 Nov 12
• 4 citations
  Reinterpretation of Chromosomal Microarrays with Detailed Medical History
  Midhat S. Farooqi, Shirelle Figueroa, Garrett Gotway, Jason Wang, Hung S. Luu, Jason Y. Park> ;The Journal of Pediatrics. 2020 Jul 1
• 22 citations
  Decitabine and Vorinostat with Chemotherapy in Relapsed Pediatric Acute Lymphoblastic Leukemia: A TACL Pilot Study
  Michael J. Burke, Rumen Kostadinov, Richard Sposto, Lia Gore, Shannon Kelley, Cara A Rabik, Jane B. Trepel, Min-Jung Lee, Akira Yuno, Sunmin Lee, Deepa Bhojwani, Sima ...> ;Clinical Cancer Research. 2020 Jan 22
• 1 citations
  Occurrence and characterization of medulloblastoma in a patient with Curry-Jones syndrome.
  Binu Porath, Sana Farooki, Melissa Gener, Shivarajan Manickavasagam Amudhavalli, Lauren Grote, Linda D. Cooley, Kevin Ginn, Midhat S. Farooqi> ;Clinical Genetics. 2020 Apr 1
• 29 citations
  Outcomes of Hematopoietic Cell Transplantation in Patients with Germline SAMD9/SAMD9L Mutations
  Ibrahim Ahmed, Midhat S. Farooqi, Mark Vander Lugt, Jessica Boklan, Melissa J. Rose, Erika Friehling, Brandon M. Triplett, Kenneth Lieuw, Blachy J. Dávila Saldaña, Chr...> ;Biology of Blood and Marrow Transplantation. 2019 Nov 1
• 3 citations
  Clinical and molecular characterization of novel deletions causing epsilon gamma delta beta thalassemia: Report of two cases.
  Elena Repnikova, Jennifer Roberts, Sarah Mc Dermott, Midhat S. Farooqi, Nazia Tabassum Iqbal, Michael Silvey, Jdl Nolen, Eugenio Taboada, Weijie Li> ;Pathology, Research and Practice. 2019 Oct 1
• 4 citations
  Cuplike nuclear morphology is highly associated with IKZF1 deletion in pediatric precursor B-cell ALL.
  Weijie Li, Linda D. Cooley, Keith J. August, Aida I. Richardson, Lei Shao, Atif A. Ahmed, Midhat S. Farooqi, David L Zwick> ;Blood. 2019 Jul 18
• 18 citations
  Precision Medicine in Pediatric Cancer: Current Applications and Future Prospects
  Atif A. Ahmed, Divya S Vundamati, Midhat S. Farooqi, Erin M. Guest> ;High-Throughput. 2018 Dec 13
• 6 citations
  Validation of a next-generation sequencing oncology panel optimized for low input DNA.
  Robyn T. Sussman, Sydney M. Shaffer, Elizabeth M. Azzato, Daniel DeSloover, Midhat S. Farooqi, Anders Meyer, David B. Lieberman, Ashkan Bigdeli, Carmela Paolillo, Kart...> ;Cancer Genetics. 2018 Sep 19
• 26 citations
  Role of high-throughput sequencing in the diagnosis of cutaneous T-cell lymphoma.
  Bryan Rea, Paul Haun, Ryan O. Emerson, Marissa Vignali, Midhat S. Farooqi, Sara Samimi, Rosalie Elenitsas, Ilan R. Kirsch, Adam Bagg> ;Journal of Clinical Pathology. 2018 Apr 10
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Abstracts/Posters

• Single Cell Sequencing Reveals Heterogeneity of Gene Expression in KMT2A Rearranged Infant ALL at Relapse Compared to Diagnosis
  Midhat S. Farooqi, 61st Annual American Society of Hematology Meeting, Orlando, FL, 12/8/2019