RobertCThomsonMD

PubMed

• 11 citations
  Complex patterns of hybridization and introgression across evolutionary timescales in Mexican whiptail lizards (Aspidoscelis).
  Anthony J. Barley, Adrián Nieto-Montes de Oca, Tod W. Reeder, Norma L. Manríquez-Morán, José Carlos Arenas Monroy, Oswaldo Hernández-Gallegos, Robert C. Thomson> ;Molecular Phylogenetics and Evolution. 2019 Mar 1
• 16 citations
  Phylogeography of a widespread lizard complex reflects patterns of both geographic and ecological isolation.
  Levi N. Gray, Anthony J. Barley, Steven Poe, Robert C. Thomson, Adrián Nieto-Montes de Oca, Ian J. Wang> ;Molecular Ecology. 2019 Feb 1
• 31 citations
  Variation Across Mitochondrial Gene Trees Provides Evidence for Systematic Error: How Much Gene Tree Variation Is Biological?
  Emilie J. Richards, Jeremy M. Brown, Anthony J. Barley, Rebecca A. Chong, Robert C. Thomson> ;Systematic Biology. 2018 Sep 1
• 39 citations
  Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies Coalescent.
  Anthony J. Barley, Jeremy M. Brown, Robert C. Thomson> ;Systematic Biology. 2018 Mar 1
• 5 citations
  Molecular phylogeny and divergence of the map turtles (Emydidae: Graptemys)
  Robert C. Thomson, Phillip Q. Spinks, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2018 Apr 1
• Corrigendum to "Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substan...
  Adrián Nieto-Montes de Oca, Anthony J. Barley, Rubi N. Meza-Lázaro, Uri Omar García-Vázquez, Joan Gastón Zamora-Abrego, Robert C. Thomson, Adam D. Leaché> ;Molecular Phylogenetics and Evolution. 2017 Feb 1
• 43 citations
  Phylogenomics and species delimitation in the knob-scaled lizards of the genus Xenosaurus (Squamata: Xenosauridae) using ddRADseq data reveal a substantial underestima...
  Adrián Nieto-Montes de Oca, Anthony J. Barley, Rubi N. Meza-Lázaro, Uri Omar García-Vázquez, Joan Gastón Zamora-Abrego, Robert C. Thomson, Adam D. Leaché> ;Molecular Phylogenetics and Evolution. 2017 Jan 1
• 87 citations
  Bayes Factors Unmask Highly Variable Information Content, Bias, and Extreme Influence in Phylogenomic Analyses.
  Jeremy M. Brown, Robert C. Thomson> ;Systematic Biology. 2016 Dec 20
• 16 citations
  Phylogeny and temporal diversification of the New World pond turtles (Emydidae).
  Phillip Q. Spinks, Robert C. Thomson, Evan McCartney-Melstad, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2016 Jul 9
• 28 citations
  Assessing the performance of DNA barcoding using posterior predictive simulations.
  Anthony J. Barley, Robert C. Thomson> ;Molecular Ecology. 2016 May 1
• 22 citations
  Sun skink landscape genomics: assessing the roles of micro‐evolutionary processes in shaping genetic and phenotypic diversity across a heterogeneous and fragmented lan...
  Anthony J. Barley, Patrick J. Monnahan, Robert C. Thomson, L. Lee Grismer, Rafe M. Brown> ;Molecular Ecology. 2015 Apr 1
• 10 citations
  A time-calibrated phylogeny of the butterfly tribe Melitaeini.
  Elizabeth C. Long, Robert C. Thomson, Arthur M. Shapiro> ;Molecular Phylogenetics and Evolution. 2014 Oct 1
• 9 citations
  Multilocus phylogeny of the New-World mud turtles (Kinosternidae) supports the traditional classification of the group.
  Phillip Q. Spinks, Robert C. Thomson, Müge Gidiş, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2014 Jul 1
• 23 citations
  The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle.
  Phillip Q. Spinks, Robert C. Thomson, H. Bradley Shaffer> ;Molecular Ecology. 2014 May 1
• 28 citations
  Misleading phylogenetic inferences based on single-exemplar sampling in the turtle genus Pseudemys.
  Phillip Q. Spinks, Robert C. Thomson, Gregory B. Pauly, Catherine E. Newman, Genevieve G. Mount, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2013 Aug 1
• 20 citations
  Species boundaries and phylogenetic relationships in the critically endangered Asian box turtle genus Cuora.
  Phillip Q. Spinks, Robert C. Thomson, Ya-Ping Zhang, Jing Che, Yonghua Wu, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2012 Jun 1
• 50 citations
  Fourteen nuclear genes provide phylogenetic resolution for difficult nodes in the turtle tree of life.
  Anthony J. Barley, Phillip Q. Spinks, Robert C. Thomson, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2010 Jun 1
• 84 citations
  Genome-enabled development of DNA markers for ecology, evolution and conservation.
  Robert C. Thomson, Ian J. Wang, Jarrett R. Johnson> ;Molecular Ecology. 2010 Jun 1
• 21 citations
  Rapid progress on the vertebrate tree of life
  Robert C. Thomson, H. Bradley Shaffer> ;BMC Biology. 2010 Mar 8
• 22 citations
  Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle, Emys marmorata in California.
  Phillip Q. Spinks, Robert C. Thomson, H. Bradley Shaffer> ;Molecular Ecology. 2010 Feb 1
• 107 citations
  Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles
  Robert C. Thomson, H. Bradley Shaffer> ;Systematic Biology. 2010 Jan 1
• 4 citations
  PhyLIS: A Simple GNU/Linux Distribution for Phylogenetics and Phyloinformatics
  Robert C. Thomson> ;Evolutionary Bioinformatics Online. 2009 Jul 30
• 47 citations
  Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles.
  Robert C. Thomson, Andrew M. Shedlock, Scott V. Edwards, H. Bradley Shaffer> ;Molecular Phylogenetics and Evolution. 2008 Nov 1
• 116 citations
  Delimiting species in recent radiations.
  H. Bradley Shaffer, Robert C. Thomson> ;Systematic Biology. 2007 Dec 1
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