SomakRoyMD

PubMed

• Dabrafenib and trametinib in Langerhans cell histiocytosis and other histiocytic disorders.
  Eily Cournoyer, Justin Ferrell, Susan Sharp, Anish Ray, Michael Jordan, Christopher Dandoy, Michael Grimley, Somak Roy, Robert Lorsbach, Arnold C Merrow, Adam Nelson, ...> ;Haematologica. 2024 Apr 1
• Current clinical practices and challenges in molecular testing: a GOAL Consortium Hematopathology Working Group report.
  Lee, T., Aisner, D., David, M., Eno, C., Gagan, J., Gocke, C., Guseva, N., Haley, L., Jajosky, A., Jones, D., Mansukhani, M., Mroz, P., Murray, S., Newsom, K., Paulson...> ;Blood Advances. 2023 Aug 22
• 5 citations
  Assessments of Somatic Variant Classification Using the Association for Molecular Pathology/American Society of Clinical Oncology/College of American Pathologists Guid...
  Marilyn M Li, Catherine E Cottrell, Mrudula Pullambhatla, Somak Roy, Robyn L Temple-Smolkin, Scott A Turner, Kai Wang, Yunyun Zhou, Cindy L Vnencak-Jones> ;The Journal of Molecular Diagnostics. 2023 Feb 1
• 6 citations
  Recommendations for the Use of in Silico Approaches for Next-Generation Sequencing Bioinformatic Pipeline Validation: A Joint Report of the Association for Molecular P...
  Eric J Duncavage, Joshua F Coleman, Monica E de Baca, Sabah Kadri, Annette Leon, Mark Routbort, Somak Roy, Carlos J Suarez, Chad Vanderbilt, Justin M Zook> ;The Journal of Molecular Diagnostics. 2023 Jan 1
• Identifying metastatic renal cell carcinoma in thyroid fine-needle aspirates by molecular testing.
  Tanner Freeman, Charit Taneja, N Paul Ohori, Abigail I Wald, John Skaugen, Linwah Yip, Seungwon Kim, Robert L Ferris, Marina N Nikiforova, Somak Roy, Yuri E Nikiforov> ;Endocrine-Related Cancer. 2022 Dec 1
• 5 citations
  Lineage switching of the cellular distribution of BRAFV600E in multisystem Langerhans cell histiocytosis.
  Paul Milne, Simon Bomken, Olga Slater, Ashish Kumar, Adam Nelson, Somak Roy, Jessica Velazquez, Kshitij Mankad, James Nicholson, Dan Yeomanson, Richard Grundy, Ahmed K...> ;Blood Advances. 2023 May 23
• 1 citations
  Principles and Validation of Bioinformatics Pipeline for Cancer Next-Generation Sequencing.
  Somak Roy> ;Clinics in Laboratory Medicine. 2022 Sep 1
• 45 citations
  Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Gen...
  Peter Horak, Malachi Griffith, Arpad M Danos, Beth A Pitel, Subha Madhavan, Xuelu Liu, Cynthia Chow, Heather Williams, Leigh Carmody, Lisa Barrow-Laing, Damian Rieke, ...> ;Genetics in Medicine. 2022 May 1
• 4 citations
  Containers in Bioinformatics: Applications, Practical Considerations, and Best Practices in Molecular Pathology.
  Sabah Kadri, Andrea Sboner, Alexandros Sigaras, Somak Roy> ;The Journal of Molecular Diagnostics. 2022 May 1
• 50 citations
  ALK+ histiocytosis: a new clinicopathologic spectrum highlighting neurologic involvement and responses to ALK inhibition.
  Paul Geraeds Kemps, Jennifer Picarsic, Benjamin H. Durham, Zofia Hélias-Rodzewicz, Laura Sophia Hiemcke-Jiwa, Cor van den Bos, Marianne D. van de Wetering, Carel J. M....> ;Blood. 2021 Nov 2
• 5 citations
  Electronic Health Records and Genomics: Perspectives from the Association for Molecular Pathology Electronic Health Record (EHR) Interoperability for Clinical Genomics...
  Alexis B. Carter, Lynne V. Abruzzo, Julie Woolworth Hirschhorn, Dan Jones, Danielle C. Jordan, Mehdi Nassiri, Shuji Ogino, Nimesh R. Patel, Christopher G. Suciu, Robyn...> ;The Journal of Molecular Diagnostics. 2021 Oct 15
• 2 citations
  Molecular characterization of pleomorphic mesothelioma: a multi-institutional study
  Somak Roy, Francoise Galateau-Sallé, Nolwenn Le Stang, Andrew Churg, Maureen A. Lyons, Richard Attanoos, Sanja Dacic> ;Modern Pathology. 2021 Sep 16
• 3 citations
  The Utility of Next-Generation Sequencing in Advanced Breast and Gynecologic Cancers.
  Terrell E Jones, Jian Zou, George C. Tseng, Somak Roy, Rohit Bhargava> ;American Journal of Clinical Pathology. 2021 Aug 4
• 13 citations
  The Ethics of Artificial Intelligence in Pathology and Laboratory Medicine: Principles and Practice.
  Brian R. Jackson, Ye Ye, James M. Crawford, Michael J. Becich, Somak Roy, Jeffrey R. Botkin, Monica E. de Baca, Liron Pantanowitz> ;Academic Pathology. 2021 Feb 16
• 1 citations
  An institutional experience evaluating hTERT immunostaining in 100 consecutive ThinPrep urine specimens.
  Juan Xing, Min Han, Sara E. Monaco, Rajiv Dhir, Somak Roy, Liron Pantanowitz> ;Journal of the American Society of Cytopathology. 2021 Jan 1
• 11 citations
  Whole exome sequencing reveals BAP1 somatic abnormalities in mesothelioma in situ.
  Sanja Dacic, Somak Roy, Maureen A. Lyons, Jan H. von der Thüsen, Françoise Galateau-Sallé, Andrew Churg> ;Lung Cancer. 2020 Nov 1
• 5 citations
  Is Next-Generation Sequencing Alone Sufficient to Reliably Diagnose Gliomas?
  Kwok Ling Kam, Christina L. Appin, Qinwen Mao, Rimas V. Lukas, Marina N. Nikiforova, Somak Roy, Daniel J. Brat, Craig Horbinski> ;Journal of Neuropathology and Experimental Neurology. 2020 Jul 1
• 15 citations
  KRAS amplification in metastatic colon cancer is associated with a history of inflammatory bowel disease and may confer resistance to anti-EGFR therapy
  Laura A. Favazza, Christine Megerdichian Parseghian, Cihan Kaya, Marina N. Nikiforova, Somak Roy, Abigail I. Wald, Michael S. Landau, Siobhan Proksell, Jeffrey Dueker,...> ;Modern Pathology. 2020 May 6
• 6 citations
  Interactive Browser-Based Genomics Data Visualization Tools for Translational and Clinical Laboratory Applications.
  Thomas M. Pearce, Marina N. Nikiforova, Somak Roy> ;The Journal of Molecular Diagnostics. 2019 Nov 1
• 2 citations
  Clinical Utility of GlioSeq Next-Generation Sequencing Test in Pediatric and Young Adult Patients With Brain Tumors.
  Somak Roy, Sameer Agnihotri, Soufiane El Hallani, Wayne L. Ernst, Abigail I. Wald, Lucas Santana dos Santos., Ronald L. Hamilton, Craig Horbinski, Nitin R. Wadhwani, D...> ;Journal of Neuropathology and Experimental Neurology. 2019 Jun 10
• 192 citations
  Real-Time Targeted Genome Profile Analysis of Pancreatic Ductal Adenocarcinomas Identifies Genetic Alterations That Might Be Targeted With Existing Drugs or Used as Bi...
  Aatur D. Singhi, Ben George, Joel R. Greenbowe, Jon Chung, James Suh, Anirban Maitra, Samuel J. Klempner, Andrew Eugene Hendifar, Javle Milind, Talia Golan, Randall E....> ;Gastroenterology. 2019 Jun 1
• 45 citations
  GLIS Rearrangement is a Genomic Hallmark of Hyalinizing Trabecular Tumor of the Thyroid Gland
  Marina N. Nikiforova, Alyaksandr V. Nikitski, Federica Panebianco, Cihan Kaya, Linwah Yip, Michelle A. Williams, Simion I. Chiosea, Raja R. Seethala, Somak Roy, Vincen...> ;Thyroid. 2019 Apr 26
• 8 citations
  Clinical Implementation and Validation of Automated Human Genome Variation Society (HGVS) Nomenclature System for Next-Generation Sequencing–Based Assays for Cancer
  Keith M. Callenberg, Lucas Santana-Santos, Liang Chen, Wayne L. Ernst, Michelle Barbi de Moura, Yuri E. Nikiforov, Marina N. Nikiforova, Somak Roy> ;The Journal of Molecular Diagnostics. 2018 Sep 1
• 60 citations
  Loss of Chromatin-Remodeling Proteins and/or CDKN2A Associates With Metastasis of Pancreatic Neuroendocrine Tumors and Reduced Patient Survival Times
  Somak Roy, William A. LaFramboise, Ta-Chiang Liu, Dengfeng Cao, Alyssa Luvison, Caitlyn Miller, Maureen A. Lyons, Roderick J. O’Sullivan, Amer H. Zureikat, Melissa E. ...> ;Gastroenterology. 2018 Jun 1
• 29 citations
  KRAS mutation is predictive of outcome in patients with pulmonary sarcomatoid carcinoma.
  Mitra Mehrad, Somak Roy, William A. LaFramboise, Patti Petrosko, Caitlyn Miller, Pimpin Incharoen, Sanja Dacic> ;Histopathology. 2018 Aug 1
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Journal Articles

• Next-Generation Sequencing Informatics  
  Somak Roy, William A. LaFramboise, Yuri E. Nikiforov, Marina N. Nikiforova, Mark J. Routbort, John Pfeifer, Rakesh Nagarajan, Alexis B. Carter, and Liron Pantanowitz, Arch Pathol Lab Med, 2/22/2016