GaryPing-ChuanWangMDPhD

PubMed

• Retraction: Dealcoholized muscadine wine was partially effective in preventing and treating dextran sulfate sodium-induced colitis and restoring gut dysbiosis in mice.
  Hao Li, Lindsey M Christman, Yavuz Yagiz, Taylor L Washington, Gary P Wang, Liwei Gu> ;Food & Function. 2024 Mar 18
• 1 citations
  Effects of Carboxymethylcellulose Artificial Tears on Ocular Surface Microbiome Diversity and Composition, A Randomized Controlled Trial.
  Yujia Zhou, Gurjit S Sidhu, Joan A Whitlock, Bishoy Abdelmalik, Zachary Mayer, Youlei Li, Gary P Wang, Walter A Steigleman> ;Translational Vision Science & Technology. 2023 Aug 1
• pneumonia presenting as a large pulmonary mass in a patient with AIDS.
  Taryn Bolling, Stacy Gurevitz Beal, Heather K Caulkins, Gary P Wang> ;BMJ Case Reports. 2023 Jul 31
• 1 citations
  Dealcoholized muscadine wine was partially effective in preventing and treating dextran sulfate sodium-induced colitis and restoring gut dysbiosis in mice.
  Hao Li, Lindsey M Christman, Yavuz Yagiz, Taylor L Washington, Gary P Wang, Liwei Gu> ;Food & Function. 2023 Jul 3
• 1 citations
  Smoking-induced subgingival dysbiosis precedes clinical signs of periodontal disease.
  Ryan Tamashiro, Leah Strange, Kristin Schnackenberg, Janelle Santos, Hana Gadalla, Lisa Zhao, Eric C Li, Emilie Hill, Brett Hill, Gurjit S Sidhu, Mariana Kirst, Clay W...> ;Scientific Reports. 2023 Mar 7
• 2 citations
  Muscadine grape (vitis rotundifolia) and wine polyphenols alleviated arthritis and restored the gut microbial composition in mice.
  Lindsey M Christman, Gary P Wang, Taylor L Washington, Liwei Gu> ;The Journal of Nutritional Biochemistry. 2023 Jun 1
• 1 citations
  Emulsification by vitamin E TPGS or Quillaja extract enhanced absorption of berberine without affecting its metabolism in humans.
  Yavuz Yagiz, Gary P Wang, Liwei Gu> ;Food & Function. 2022 Nov 28
• 1 citations
  A randomized controlled trial to evaluate the effectiveness of a novel mouth rinse in patients with gingivitis.
  Bianca A Newman, Claire N Rosebrough, Ryan A Tamashiro, Ana P Dias Ribeiro, Joan A Whitlock, Gurjit Sidhu, Ikramuddin Aukhil, Dianne Y Porral, Ann Progulske-Fox, Matth...> ;BMC Oral Health. 2022 Nov 2
• 6 citations
  Microbiome Resilience despite a Profound Loss of Minority Microbiota following Clindamycin Challenge in Humanized Gnotobiotic Mice.
  Lin Liu, Mariana E Kirst, Lisa Zhao, Eric Li, Gary P Wang> ;Microbiology Spectrum. 2022 Feb 23
• 9 citations
  Stability of healthy subgingival microbiome across space and time.
  Ryan Tamashiro, Leah Strange, Kristin Schnackenberg, Janelle Santos, Hana Gadalla, Lisa Zhao, Eric C Li, Emilie Hill, Brett Hill, Gurjit Sidhu, Mariana Kirst, Clay Wal...> ;Scientific Reports. 2021 Dec 14
• 1 citations
  Linkage of resistance-associated substitutions in GT1 sofosbuvir + NS5A inhibitor failures treated with glecaprevir/pibrentasvir.
  Gary P. Wang, Gretja Schnell, Jens Kort, Gurjit S. Sidhu, Layla Schuster, Rakesh Tripathi, Lois Larsen, Larry Michael, Ken Bergquist, Ashley Magee, Chandni B. Patel, J...> ;Journal of Hepatology. 2021 May 21
• 11 citations
  Subgingival microbiome of deep and shallow periodontal sites in patients with rheumatoid arthritis: a pilot study
  Ryanne Lehenaff, Ryan Tamashiro, Marcelle M. Nascimento, Kyulim Lee, R. Jenkins, Joan A. Whitlock, Eric Li, Gurjit S. Sidhu, Susanne Anderson, Ann Progulske-Fox, Micha...> ;BMC Oral Health. 2021 May 8
• 2 citations
  Microbiota phylogenic analysis revealed decreased abundance of Faecalibacterium prausnitzii, an anti-inflammatory commensal bacterium, in patients with chronic graft-v...
  Nosha Farhadfar, Raad Z. Gharaibeh, Debra E. Lyon, Joan A. Whitlock, Hemant S. Murthy, Michael T. Weaver, Gary P. Wang, Christian Jobin, John R. Wingard, Debra Lynch K...> ;Hematology/oncology and Stem Cell Therapy. 2021 Mar 19
• 8 citations
  Baseline Gut Microbiota Composition Is Associated with Major Infections Early after Hematopoietic Cell Transplantation.
  Hemant S. Murthy, Zeina Al-Mansour, Andrew Kozlov, Gaurav Trikha, Rachel C. Newsome, Josee Gauthier, Nosha Farhadfar, Yu Wang, Debra Lynch Kelly, John Lybarger, Christ...> ;Biology of Blood and Marrow Transplantation. 2020 Nov 1
• 2 citations
  A single variant sequencing method for sensitive and quantitative detection of HIV-1 minority variants.
  Gurjit S. Sidhu, Layla Schuster, Lin Liu, Ryan Tamashiro, Eric Li, Taimour Y. Langaee, Richard H. Wagner, Gary P. Wang> ;Scientific Reports. 2020 May 18
• 4 citations
  Analysis of Tryptophan Metabolites in Serum Using Wide-Isolation Strategies for UHPLC-HRMS/MS.
  Vanessa Y. Rubio, Joy G Cagmat, Gary P. Wang, Richard A. Yost, Timothy J. Garrett> ;Analytical Chemistry. 2020 Jan 13
• 28 citations
  Efficacy of Glecaprevir and Pibrentasvir in Patients With Genotype 1 Hepatitis C Virus Infection With Treatment Failure After NS5A Inhibitor Plus Sofosbuvir Therapy.
  Anna S. Lok, Mark S. Sulkowski, Jens Kort, Ira Willner, K. Rajender Reddy, Mitchell L. Shiffman, Mohamed Hassan, Brian L. Pearlman, Federico Hinestrosa, Ira M. Jacobso...> ;Gastroenterology. 2019 Dec 1
• 30 citations
  Decreased ω-6:ω-3 PUFA ratio attenuates ethanol-induced alterations in intestinal homeostasis, microbiota, and liver injury
  Dennis R. Warner, Jeffrey Warner, Josiah E. Hardesty, Ying L. Song, Taylor N. King, Jing X. Kang, Chih-Yu Chen, Shanfu Xie, Fang Yuan, Aminul Islam Prodhan, Xipeng Ma,...> ;Journal of Lipid Research. 2019 Oct 4
• 16 citations
  Upper versus lower airway microbiome and metagenome in children with cystic fibrosis and their correlation with lung inflammation.
  Mariana E. Kirst, Dawn Baker, Eric Li, Mutasim Abu-Hasan, Gary P. Wang> ;Plos One. 2019 Sep 19
• 32 citations
  The subgingival microbiome in patients with established rheumatoid arthritis.
  Ted R. Mikuls, Clay Walker, Fang Qiu, Fang Yu, Geoffrey M. Thiele, Barnett Alfant, Eric Li, Lisa Y. Zhao, Gary P. Wang, Susmita Datta, Jeffrey B. Payne> ;Rheumatology. 2018 Jul 1
• 17 citations
  Prevalence and impact of baseline resistance-associated substitutions on the efficacy of ledipasvir/sofosbuvir or simeprevir/sofosbuvir against GT1 HCV infection.
  Gary P. Wang, Norah A. Terrault, Jacqueline D. Reeves, Lin Liu, Eric Li, Lisa Zhao, Joseph K. Lim, Giuseppe Morelli, Alexander Kuo, Josh Levitsky, Kenneth E. Sherman, ...> ;Scientific Reports. 2018 Feb 16
• 13 citations
  Molecular Identification of Bacteria in Intra-abdominal Abscesses Using Deep Sequencing.
  Andrew Kozlov, Lorenzo Bean, Emilie V Hill, Lisa Zhao, Eric Li, Gary P. Wang> ;Open Forum Infectious Diseases. 2018 Jan 24
• 5 citations
  Sofosbuvir (SOF) Suppresses Ledipasvir (LDV)-resistant Mutants during SOF/LDV Combination Therapy against Genotype 1b Hepatitis C Virus (HCV).
  Ashley N. Brown, Lin Liu, Jaime L. Rodriquez, Lisa Zhao, Layla Schuster, Eric Li, Gary P. Wang, Michael Neely, Walter M. Yamada, George L. Drusano> ;Scientific Reports. 2017 Oct 31
• 26 citations
  Sequencing of Hepatitis C Virus for Detection of Resistance to Direct-Acting Antiviral Therapy : A Systematic Review
  Sofia Bartlett, Jason Grebely, Auda A. Eltahla, Jacqueline D. Reeves, Anita Y. M. Howe, Veronica Miller, Francesca Ceccherini-Silberstein, Rowena A. Bull, Mark W. Doug...> ;Hepatology Communications. 2017 May 22
• 148 citations
  Locoregional Effects of Microbiota in a Preclinical Model of Colon Carcinogenesis.
  Sarah Tomkovich, Ye Yang, Kathryn Winglee, Josee Gauthier, Marcus Mühlbauer, Xiaolun Sun, Mansour Mohamadzadeh, Patricia Martin, Gary P. Wang, Eric Oswald, Anthony A. ...> ;Cancer Research. 2017 May 15
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Journal Articles

• Dysbiosis and alterations in predicted functions of subgingival microbiome in chronic periodontitis  
  Kirst ME, Li EC, Alfant B, Chi YY, Walker C, Magnusson I, Applied and Environmental Microbiology, 1/1/2015
• Immune Suppression, Intestinal Barrier Dysfunction, and Dysbiosis by Gastrointestinal Bacillus anthracis Infection  
  Lightfoot YL, Yang T, Sahay B, Zadeh M, Cheng SX, Owen JL, Mohamadzadeh M, PLoS One, 1/1/2014
• Epithelial CaSR Deficiency Alters Intestinal Integrity and Promotes Proinflammatory Immune Responses  
  Cheng SX, Lightfoot YL, Yang T, Zadeh M, Tang L, Sahay B, Owen JL, Mohamadzadeh M, FEBS Letter, 1/1/2014
• Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea  
  Antharam VC, Li EC, Ishmael A, Sharma A, Mai V, Rand KH, J of Clin Microbiol, 1/1/2013
• Loop Residues and Catalysis in OMP Synthase  
  Hansen MR, Grubmeyer C, Biochemistry, 1/1/2012
• Loss of p19Arf in a Rag1-/- B-precursor population initiates acute B-lymphoblastic leukemia  
  Hauer, J., Mullighan, C., Morillon, E., Bruneau, J., Brousse, N., Lelorc`h, M., Romana, S., Boudil, A., Kracker, S., Bushman, F. D., Borkhardt, A., Fischer, A., Hacein..., Blood, 1/1/2011
• Transfusion independence and HMGA2 activation after gene therapy of human b-thalassemia  
  Cavazzana-Calvo M, Payen E, Negre O, Hehir K, Fusil F, Down J, Denaro M, *Brady T, Westerman K, Cavallesco R, Gillet-Legrand B, Caccavelli L, Sgarra R, Maouche-Chrétie..., Nature, 1/1/2010
• Analysis of lentiviral vector integration in HIV+ study subjects receiving autologous infusions of gene modified CD4+ T cells  
  Levine, B. L., Binder, G. K., Berry, C., Malani, N., McGarrity, G., Tebas, P., June, C., Bushman, F. D., Molecular Therapy, 1/1/2009
• Methods for integration site distribution analyses in animal cell genomes  
  Ciuffi, A., Ronen, K., Brady, T., Malani, N., Berry, C. C., Bushman, F. D., Methods, 1/1/2009
• Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1  
  Hacein-Bey-Abina, S., Garrigue, A., Soulier, J., Lim, A., Morillon, E., Clappier, E., Caccavelli, L., Delabesse, E., Beldjord, K., Asnafi, V., MacIntyre, E., Dal C..., J. Clin. Invest., 1/1/2008
• DNA bar coding and pyrosequencing to analyze adverse events in therapeutic gene transfer  
  Garrigue, A., Ciuffi, A., Ronen, K., Leipzig, J., Berry, C.C., Lagresle-Peyrou, C., Benjelloun, F., Hacein-Bey-Abina, S., Fischer, A., Cavazzana-Calvo, M., Bushman, F.D., Nucleic Acids Research, 1/1/2008
• HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications  
  Ciuffi, A., Leipzig, J., Berry, C. C., Bushman, F. D., Genome Research, 1/1/2007
• DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations  
  Hoffmann, C., Minkah, N., Leipzig, J., Arens, M. Q., Tebas, P., and Bushman, F. D., Nucleic Acids Research, 1/1/2007
• A statistical method for comparing viral growth curves  
  Wang, G. P. and Bushman, F. D., J. Virol. Methods, 1/1/2006
• Motional dynamics of the catalytic loop in OMP synthase  
  Cahill, S. M., Liu, X., Girvin, M. E., and Grubmeyer, C., Biochemistry, 1/1/1999
• Kinetic mechanism of OMP synthase: a slow physical step following group transfer limits catalytic rate  
  Lundegaard, C., Jensen, K. F., Grubmeyer, C., Biochemistry, 1/1/1999
• Making a nucleotide: structure and function of orotate phosphoribosyltransferase  
  Grubmeyer, C. and Wang, G. P., Paths to Pyrimidines, 1/1/1998
• Local Effect of Glycine Substitution in a Model Helical Peptide  
  Lyu, P.C., Liff, M.I., Kallenbach, N.R., J. Am. Chem Soc., 1/1/1991
• Defining functional signatures of dysbiosis in periodontitis progression  
  Wang, G.P., Genome Medicine
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Abstracts/Posters

• Single-Variant Sequencing Revealed Rapid HCV Evolution in HIV Immune Reconstitution
  Liu, L., Nardo, D., Li, E., Conference on Retroviruses and Opportunistic Infections 2015, Seattle, WA, 1/23/2015
• Oxalobacter formigenes Colonization in a Hyperoxaluric Rat Model of Gastric Bypass Increases Beneficial Gut Bacteria and Acts as a Keystone Species
  Chastain-Gross, R., Li, E., Hatch M., Canales B.K., 2015 Annual Meeting of the American Urological Association Education and Research Inc., New Orleans, LA, 1/15/2015
• Upper airway microbiota sampling by throat swabs overestimates microbial diversity and poorly reflects the composition of lung microbiota in children with cystic fibrosis
  Kirst, M. E., Baker, D., Li, E., Abu-Hasan, M., 27th Annual North American Cystic Fibrosis Conference, Salt Lake City, UT, 1/17/2013
• Patient preferences and compliance with oral vancomycin solution for the management of Clostridium difficile infection
  Yang, D., Rajca, B., Gupte, A., Sultan, S., American College of Gastroenterology 2013 annual meeting, San Diego, CA, 1/11/2013
• Microbial shifts in oral and gut flora in patients undergoing bone marrow transplantation for hematological malignancy analyzed by 16S deep sequencing
  Kozlov, A., Antharam, V., Lybarger, J., Li, E., Wingard, J.R., ACP Florida Chapter in Orlando, 1/23/2012
• Microbial shifts in oral and gut flora in patients undergoing bone marrow transplantation for hematological malignancy analyzed by 16S deep sequencing
  Kozlov, A., Antharam, V., Lybarger, J., Li, E., Wingard, J.R., ACP National Meeting, New Orleans, 1/19/2012
• Evolution and mutation linkage of naturally occurring variants resistant to HCV protease inhibitors in cirrhotic liver transplant patients analyzed by deep sequencing
  Kirst, M.E., Li, E.C., Wang, C. X., Dong, H.J., Liu, C., Fried, M.W., Nelson, D.R., International Workshop on HIV & Hepatitis Virus Drug Resistance, Barcelona, Spain, 1/5/2012
• Molecular Analysis of Gut Microbiota Associated with Clostridium Difficile Infection
  Antharam V, Li EC, International Human Microbiome Congress 2011, Vancouver, BC, Canada, 1/9/2011
• Microbial Ecology of Gut Microbiota Associated with C. Difficile infection
  Antharam, V., Li, E., Rand, K., Mai, V., University of Florida Clinical Science Translational Institute (CTSI) Open House, Gainesville, FL, 1/1/2011
• Molecular Analysis of the Gut Microbiota associated with Clostridium difficile Infection
  Antharam, V., Li, E., Mai, V., Rand, K., EPI Research Day 2011, Gainesville, FL, 1/1/2011
• Detection of naturally occurring resistant variants in NS3 protease region of hepatitis C virus through 454 deep sequencing
  Kirst, M., Li, E., Wang, C., Fried, M., Liu, C., Nelson, DR, EPI Research Day 2011, Gainesville, FL, 1/1/2011
• Microbiome assessment of Clostridium difficile infection by pyrosequencing
  Antharam, V., Li, E., Alfant, B, Florida Genetics, Gainesville, FL, 1/1/2010
• The Role of Gut Microbiota in Clostridium Difficile Infection
  Antharam V, Li EC, Rand K, Sixth Annual Symposium of the UF Genetics Institute, Gainesville, FL, 1/1/2010
• Analysis of Resistance Mutations to Hepatitis C Virus Protease Inhibitors by Deep Sequencing
  Kirst ME, Li EC, Wang CX, Fried M, Liu C, Nelson D, Sixth Annual Symposium of the UF Genetics Institute, Gainesville, FL, 1/1/2010
• Towards a Robust Approach of Identifying Novel Archaeal Species Using 16s rRNA Based PCR
  Antharam, V., Li, E., Alfant, B., University of Florida Department of Medicine Research Day, Gainesville, FL, 1/1/2010
• Deep Sequencing Analysis of Subgingival Microbiota in Localized Aggressive Periodontitis
  Alfant B, Li EC, Shaddox L, Walker C, UF Department of Medicine Research Day 2010, Gainesville, FL, 1/1/2010
• Subgingival Microbiota in Patients with Aggressive Periodontitis Analyzed by Deep Sequencing
  Li EC, Alfant B, Walker C., UF Celebration of Research 2010, Gainesville, FL, 1/1/2010
• DNA bar coding and pyrosequencing to analyze integration site patterns in patients treated for SCID-X1 using integrating vectors
  Hacein-Bey-Abina, S., Garrigue, A., Fischer, A., Cavazzana-Calvo, M., Bushman, F.D., Cold Spring Harbor Laboratory, NY, 1/20/2008
• DNA bar coding and pyrosequencing to analyze integration site patterns in patients treated for SCID-X1 using integrating vectors
  Hacein-Bey-Abina, S., Garrigue, A., Fischer, A., Cavazzana-Calvo, M., and Bushman, F.D., The 3rd International Conference on Retroviral Integrase, Woods Hole, MA, 1/14/2008
• Analysis of sequence evolution in acute HCV using DNA barcoding and pyrosequencing
  Chang, K.M., Bushman, F.D., 15th International Symposium on Hepatitis C Virus and Related Viruses, San Antonio, TX, 1/5/2008
• HIV integration targeting: a role for post-translational modification of histones
  Ciuffi, A., Leipzig, J., Berry, C. C., and Bushman, F. D., 14th Conference on Retroviruses and Opportunistic Infections, Los Angeles, CA, 1/25/2007
• The functional and dynamic coupling of the mobile catalytic loop in orotate phosphoribosyltransferase
  Cahill, S. M., Liu, X., Girvin, M. E., and Grubmeyer, C., Annual Meeting of the American Society of Biochemistry and Molecular Biology (ASBMB), San Francisco, CA, 1/16/1999
• The role of a surface mobile loop in orotate phosphoribosyltransferase: implications for catalysis
  Lundegaard, C., Jensen, K. F., and Grubmeyer, C., 17th International Congress of Biochemistry and Molecular Biology, San Francisco, CA, 1/24/1997
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Lectures

• Alterations in the gut microbiome in Clostridium difficile infection 
  University of Florida, Gainesville, FL - 1/30/2014
• The role of gut microbiota in Clostridium difficile infection 
  University of Florida, Gainesville, FL - 1/17/2014
• If your gut bacteria aren’t happy, ain’t nobody happy 
  The Villages, FL - 1/13/2014
• Interstinal Microbiome and Dysbiosis in Clostridium difficile infection 
  University of Florida, Gainesville, FL - 1/6/2014
• Alterations in the gut microbiome in recurrent Clostridium difficile infection 
  Philadelphia, PA - 1/1/2014
• Next generation sequencing: Gene therapy, HCV and microbiome 
  University of Florida, Gainesville, FL - 1/14/2013
• Harnessing the power of the human microbiome 
  University of Florida, Gainesville, FL - 1/12/2013
• Analysis of Human microbiota by 16S deep sequencing 
  University of Florida, Gainesville, FL - 1/26/2012
• Deep sequencing analysis of naturally occurring mutations associated with resistance to HCV 
  Cambridge, MA - 1/1/2011
• Disordered distal gut microbiota in Clostridium difficile infection revealed by high density deep sequencing 
  Boston, MA - 1/1/2011
• Massively Parallel Pyrosequencing in HIV and Hepatitis C Research 
  Shands at the University of Florida at Jacksonville, FL - 1/17/2010
• Massively Parallel Pyrosequencing to Analyze Adverse Events in Gene Therapy, and Hepatitis C virus diversification 
  University of Florida Shands Cancer Center - 1/5/2010
• HCV Transmission and Diversification in Infected Subjects Analyzed by Deep Sequencing 
  San Francisco, CA - 1/1/2010
• Sequence variations in acute HCV analyzed by DNA barcoding and pyrosequencing 
  Washington, D.C. - 1/1/2008
• HIV integration, adverse events in gene therapy, and HIV/HCV resistance analyzed by pyrosequencing 
  Temple University School of Medicine, Philadelphia, PA - 1/1/2008
• DNA bar-coding and pyrophosphate sequencing reveals rare HIV drug resistance mutations of potential clinical significance 
  Barbados - 1/1/2007
• HIV integration site selection: analysis of 40,000 integration sites reveals roles of histone binding and epigenetic modifications in vivo 
  Cold Spring Harbor Laboratory, NY - 1/1/2007
• Novel therapeutic targets and gene therapy in HIV 
  Gaborone, Botswana - 1/1/2005
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Other

• Use of Truvada as prophylaxis against HIV infection 
  Wang, G.P., Ethics Talk Podcasts, Virtual Mentor, American Medical Association
  http://virtualmentor.ama-assn.org/site/ethicstalk.html
  1/1/2014